HsaALTA0006942-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:9804]
Coordinates
chr12:50410418-50419221:-
Coord C1 exon
chr12:50419181-50419221
Coord A exon
NA
Coord C2 exon
chr12:50410418-50410498
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTTGATTTCTTGGCAGAAAGATG
3' ss Score
-4.48
Exon sequences
Seq C1 exon
GCGAAGTGAAGGGTGGCCCAGGTGGGGCCAGGCTGACTGAA
Seq A exon
NA
Seq C2 exon
ATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800-0-6,0-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF111803=DUF2968=PU(25.0=89.7),PF078886=CALCOCO1=PU(21.0=72.4),PF052956=Luciferase_N=PU(5.4=10.3)
Other Inclusion Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGTGAAGGGTGGCC
R:
GCGCACAAGCTGCTCAAAC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)