RnoALTA0032815-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049033 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:RGD Symbol;Acc:1305912]
Coordinates
chr7:141297990-141307233:-
Coord C1 exon
chr7:141307122-141307233
Coord A exon
NA
Coord C2 exon
chr7:141297990-141298074
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
TTTGATTTCTTGGCAGAAAGATG
3' ss Score
-4.48
Exon sequences
Seq C1 exon
GCCGTTAGTGAGGCGCGCAGCTGGTGGACAGCAGCCCTCCTGGGGCGCGGCGGCCGGAGAGTAAGCGCCGCGGGCCGAACAGGGTTGCGTGTGCGCGGGGCCGGGAGCCTCG
Seq A exon
NA
Seq C2 exon
ATGGATACTACAATGGTGAATCTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGCTGGAGATTATCAATGAAGGAAATGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049033-3-1,3-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059116=DUF869=PU(12.2=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACAGGGTTGCGTGTG
R:
ATTGATAATCTCCAGCCGGCG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]