HsaALTA0006942-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:50016635-50025400:-
Coord C1 exon
chr12:50025328-50025400
Coord A exon
NA
Coord C2 exon
chr12:50016635-50016715
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TTTGATTTCTTGGCAGAAAGATG
3' ss Score
-4.48
Exon sequences
Seq C1 exon
GAAGTGAGTAGTGGGGGTGCCAGACCAGGTGCGTCTGCCGCTGGATTGTGATAGGAAGCAGAGTGTTCGTGTG
Seq A exon
NA
Seq C2 exon
ATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800-5-30,5-29,5-28-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078886=CALCOCO1=PU(13.9=69.0),PF140731=Cep57_CLD=PU(11.3=55.2)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCAGAGTGTTCGTGTG
R:
TCACTGAGAATCTCCACCCGG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains