HsaALTA0006942-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:50016635-50025400:-
Coord C1 exon
chr12:50025328-50025400
Coord A exon
chr12:50016716-50016719
Coord C2 exon
chr12:50016635-50016715
Length
4 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TATATTTGATTTCTTGGCAGAAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GAAGTGAGTAGTGGGGGTGCCAGACCAGGTGCGTCTGCCGCTGGATTGTGATAGGAAGCAGAGTGTTCGTGTG
Seq A exon
AAAG
Seq C2 exon
ATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800-5-30,5-29,5-28-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF078886=CALCOCO1=PU(13.9=69.0),PF140731=Cep57_CLD=PU(11.3=55.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCAGAGTGTTCGTGTG
R:
TCACTGAGAATCTCCACCCGG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains