MmuALTA0014746-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99473314-99482074:-
Coord C1 exon
chr15:99481938-99482074
Coord A exon
chr15:99473399-99473402
Coord C2 exon
chr15:99473314-99473398
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
TATATTTGATTTCTTGGCAGAAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GGATCTGGCGGCGCGGTTTTACACTGCCGTTAGTGAGGCGCGTCGCTGGTAGACAGCAGCCCTCCTGGGGCGCGGCGGCCGGAGAGTGAGCGCCGCGGGCCGGACGGGGTTGCGTGTGCGCGGGGCCGGGAGCCTCG
Seq A exon
AAAG
Seq C2 exon
ATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAGCTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF059116=DUF869=PU(12.6=58.6),PF054786=Prominin=PU(12.5=62.1)
Other Inclusion Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGACAGCAGCCCTCCTGG
R:
CCACAAATTCACCATTGTAGTATCCA
Band lengths:
116-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: