GgaALTA1026346-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006271 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chrLGE22C19W28_E50C23:335216-336724:+
Coord C1 exon
chrLGE22C19W28_E50C23:335216-335562
Coord A exon
chrLGE22C19W28_E50C23:336641-336643
Coord C2 exon
chrLGE22C19W28_E50C23:336644-336724
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TAGTTCTGTTTTCTTGGCAGGAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
ATGGCTGCGCTCGGGGTCGCTGCAGAAGGCGCAGCCCTCGGGTTGGGGGTCCAGTCCCCACCGCCATCCTCCGCCTGCTCCGTTGCTAAGCAGCACAGGCTGGAAGCAGCTGCCAATAGTAACGATGGCGCCTGGCCGGCTTCACCACCCGGCAGCCACGGCAATCAGCGGAGCGGAAAAGCCTTGCCCTTAGCAGACATGGCGCCGGCTTGGCTTCAGACTCACAGCGAGCAGAGCCAATCAGAAACCGGGAGGGTGGAGAGCGCCCTGGGATTGGCTGGCGGCAGGGATTCAAACCGAATCGCGGGGCAGTTGAGGCCGGCTGTTGGAGCGGGAGCTCGGACACC
Seq A exon
GAG
Seq C2 exon
GATGGATACCACAGTGCGGAATCTGTGGAATTTGTGTGACCAACTCATACGCCAGGCTGAAGTTTTAAGTGAAGGAAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006271-1-2,1-1,1-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(5.8=6.9)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(21.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAGGGATTCAAACCGAA
R:
ATTCCACAGATTCCGCACTGT
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]