MmuALTA0014746-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000023015 | Racgap1
Description
Rac GTPase-activating protein 1 [Source:MGI Symbol;Acc:MGI:1349423]
Coordinates
chr15:99642883-99651643:-
Coord C1 exon
chr15:99651507-99651643
Coord A exon
chr15:99642926-99642971
Coord C2 exon
chr15:99642883-99642925
Length
46 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
TATATTTGATTTCTTGGCAGAAA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GGATCTGGCGGCGCGGTTTTACACTGCCGTTAGTGAGGCGCGTCGCTGGTAGACAGCAGCCCTCCTGGGGCGCGGCGGCCGGAGAGTGAGCGCCGCGGGCCGGACGGGGTTGCGTGTGCGCGGGGCCGGGAGCCTCG
Seq A exon
AAAGATGGATACTACAATGGTGAATTTGTGGACTCTGTTTGAGCAG
Seq C2 exon
CTTGTGCGCCGGATGGAGATTATCAATGAAGGAAATGAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023015-1-5,1-4,1-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.026
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTTACACTGCCGTTAGT
R:
GATAATCTCCATCCGGCGCAC
Band lengths:
148-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types