HsaEX0051849 @ hg38
Exon Skipping
Gene
ENSG00000161800 | RACGAP1
Description
Rac GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:9804]
Coordinates
chr12:50016631-50025461:-
Coord C1 exon
chr12:50025398-50025461
Coord A exon
chr12:50018516-50018589
Coord C2 exon
chr12:50016631-50016719
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCATTTTTACCTCAGGAG
3' ss Score
7.5
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCTGCCGTTGGGTGAGGCGCGGAGCGAAGTGAAGGGTGGCCCAGGTGGGGCCAGGCTGACTGAA
Seq A exon
GAGAGCCAAAGGAAATCAACATTTGAATTGACTACCCAATGTCCTGCCCCTGTTTCTGTCCTGTAGCACTTAGG
Seq C2 exon
AAAGATGGATACTATGATGCTGAATGTGCGGAATCTGTTTGAGCAGCTTGTGCGCCGGGTGGAGATTCTCAGTGAAGGAAATGAAGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161800_MULTIEX2-4/8=1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF111803=DUF2968=PU(23.4=89.7),PF078886=CALCOCO1=PU(16.0=69.0),PF140731=Cep57_CLD=PU(15.3=65.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCGTTGGGTGAGGC
R:
GGACTTCATTTCCTTCACTGAGA
Band lengths:
153-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development