MmuINT0131714 @ mm10
Intron Retention
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97750791-97753923:-
Coord C1 exon
chr15:97753777-97753923
Coord A exon
chr15:97750889-97753776
Coord C2 exon
chr15:97750791-97750888
Length
2888 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AGCCTCTGCTGTCTTCACAGATG
3' ss Score
8.77
Exon sequences
Seq C1 exon
TCCCCTACGACATCTGCAGACCTGACCACTCAGTGCTGACCCTGCACCTGCCGGTGACGGCCTCGGTGAGAGAAGTGATGGCAGCTTTGGCCCATGAGGACCACTGGACCAAGGGACAGGTGTTGGTGAAGGTCAATTCTGCCGGTG
Seq A exon
GTGAGTTGTGTCGCTGGTCTGAGAGAGCACTGTCACATCCAAACCCACTCCCTTGAATTCAGACCGTTACTGTCATGCCCTGAATTGAGGCAGGATTACCACATCTCTCCTGGCTGTTTCAGAAGCAATGCTCGAGACCCAGCCGGTTGGTTCGCTCACTGGCTGTGGCTCCTGACCCGGGGTGTGTGAGCTCTCTGTATGAGCTCCTCGTTTGTAAAGCAGAGATGGTAAAATGGCGGGGCCTGGTAGAGGATTTGTGAGAATGAAGTGAAGAAAGTGTTCAGAGCGCCTATTCCTATACACTCACTCATTCCCCAGCGCTGTCTCGACAGAGGATATCTTTATTTTTAAAGATTTTTTAAAAATTTTATTTATATGAGTGCGCTATAGCTATCTTCAGACACACCAGACAGGGTATTGGATCCCTATTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAACAGTTGGTGGTCTTAACCCCTGAATCATCTCTTAAGCCCACAGGAGGGAATCCTATCCCCTCTTTTCCACCATGGAAGCTGGCGCTCAAGAGAATTCGGCCTACTCCCAGAGCTAATGGAGTTAGTGAGCCTGTGGCTAGCCTTTGACTTTAGATTGTCTTCCTTTTTTAAGTTACTCAGCAGGCTTCCTGGCTTTGTCATAAAAAGCATGATCAAAAGAACTTTGGAGACACAAATGTATATCTCATCTTTCAGCTTAACAGCCCGCTGTGGGGCCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAAGCCAGCATGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAACAAACAAAACAACAAAAAACAGTCCCCTGTAAAGGGAAGTCGGGGAAGAAACTCAGCGCAAGGACCAAAGCAGAGGCCTTGGCTTTTACTGGCTTCTCCTAGTGGCTTGCTCAGCCTGCTTTCTTATAGAACCCAGGACCACATTCTCAGCATGGCACCGCCCACAGTGGGCTGGGCCTTCCAGATCAATCATTAATCAAGAACTTGCTACAGGCCAGCCTGACAGAGACATTTTCTTACTTGAGGTTCCTTCTTCCCAGATGAGCCTAGCTTGTGTCAGAATGATGAACTAACTAGCCAGGATTGCAAACACTTTTAAAATAAGGTTTTAAAAATAGTATTGTTCTTATTTTATACGTATTGGTTGTTTTGCCCAAATGGATGGCCTCTGCAGGCTTACATGTGTTTGATTCCTGTGAAACTTAGAAGAGGGGGTTAGATCCCCTGAAACAAGACGTACACAAGGTTGTGAGCTACCAAGTGGGTGGTAGGAATAGAACCCAGGTCCTCTGGAAGAGTAACCAGTGTCCCTGACTGCTGAGCCACCTTTTCGGCCCTGATAGAAAACATTTTGAAGCATCATCTACGCAGCAGCAATGTGCTAGTTCCTACAGCAACTATGACAGATCTGCTGGATGATGGTGAACATAGACTCCCAGGGTTAGGAGAGAATTTCACATTAACTACGACCCAACTGGGGCACCCTGGGCCTCTCTGCGTCTCCATGTCCTTGTCTGCCAAGTGACTGCACTCTTATGAGAGTCTGTAGCTGTTAGACTGCAGATGCCCACAAGGCATGCAACCCTGAGTCTAGCACGTCTCTTCCTAGACTCCTGTCTATGTTATCAGGACCTGCTTTGGGAGATTTTTGGCACACTAAAAGCCATTGTTATCCTTGAGTAGTGTAGCCTGGACTTGACGGTCAGAGCCCAGCAGTCAGGAACTGGGGTCATCAGGGAACTGTGGCAAGGGTGGCTAAGAGAAAAGCCCTCAACCTTCAGGAGTCAGCAGGAGTGACTCTAGAGCTCACCTGTGTGCTCTGCTCTGGAAAGCACTGCCCTCTGGTGGCTACCTGGAGAGTCACTGCTGCTCAGTGTCCTCCTTTATTGAGATCCTACTATGTGGCAGTCATTTTTCAGACCACTGATGGTCACTAGCCAATGCTCTATTGGAGAGATGGCCCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGCCTCACAACCATCTGCAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAAATGGCTAAAGTGTACTCACATAAATAAAATAATTTTTTAAAAAAATATACAAATCTCACTAAGTGTACACTTGCATATAAATTATATATAAAACCACTTCCTCAACATGTGATTATAAAGCTATACACAAAATAGAAGAAATGTATTAATAGAAGAAAATAGATAAAGTGGATTAAATAGAAGAGCTAAGTTTTTCTCTGGACACATGAGTAGTCTTGTATGCCATACTTTGGAAGCCACTGTTCAAGGGCCCAGAGACCGGAAGACTCAAGCATTGTCCAGTCCATAGGTGATGAAAGTCAACATTAAGAGGTAGATAGGCCATTTCCTAATTTCCAGAAGTTTTTTTTTTTATACACATCTTTTCCCTGCAGCAGCCACACTTATAAAAATGGCCTGGGAAGTAGTTGGGGTGAGCCTTACAGGCTTTGGTTTATTGAAGAGGAAATCGAGGGTCAGGAAGGCGGATGTCTCGTCCATAAGTGACTAGTCTCAGGTGCTGCCTGAGTCAACGCCACAGGCAGTGTCGAGGTGTGGTCATGAGCACCCGTGCGTTTAGAGTCTCTCCCCAGCCATCTCCAGAAGAAGAACACTTTCAGCTAGGCAGGGCCTCCAGCTGCTCCCTGGCCTCTGTCCCAACCACCTCCCCTCAGCACAGCCTCTGCTGTCTTCACAG
Seq C2 exon
ATGTCGTTGGCTTGCAGCCAGATGCCCGTGGTGTGGCCACATCCCTGGGGCTCAACGAGCGGCTCTTTGTTGTCGACCCACAGGAAGTGCATGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469:ENSMUST00000129223:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types