MmuINT0131715 @ mm10
Intron Retention
Gene
ENSMUSG00000022469 | Rapgef3
Description
Rap guanine nucleotide exchange factor (GEF) 3 [Source:MGI Symbol;Acc:MGI:2441741]
Coordinates
chr15:97761679-97766974:-
Coord C1 exon
chr15:97766762-97766974
Coord A exon
chr15:97761733-97766761
Coord C2 exon
chr15:97761679-97761732
Length
5029 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ACTCTTCGTACTGTCCTCAGACA
3' ss Score
8.06
Exon sequences
Seq C1 exon
GTCAGCTGGCCAGGTGAGAACCACTGGCAGGTGGGCCCAGCTGTGGTGGAGAGTCCAGCTGTGGGGGCACCGCAGGTGGGAGGTCTCCCGGACGTGGTTCCGGAGGGCACGCTGCTCAATATGGTGTTGAAGAGAATGCACCGTCCCCGCTGCTGCTCTTACCAGCTAGTGTTCGAGCACCGGCGCCCCAGCTGCATCCAGGGACTCCGCTGG
Seq A exon
GTGAGTACCGGCCATCTGCCAGGCTGGGTCAGGGCTGGAAGAGTCGGGATTGTAGTGCTGGTGGGCCAGGCAGCTTTCTCCAGAGCAAATTCATCTGGGTGAAGAGAAGGCATTGAAGTTTGGTGGCAGTGTGTGTTTTGCTGGTCACACAATGAGCCTGTATGCCTGTATGCCCCGTGTGTATGGCATGCTGCGCTGCCCCATTCAGCCACCGGTGGGTGAGCAGGAAAGGGTTTTATCATTTATCCATCACTTCCATGTGCCAGGCATGGGCTTACATGTTTGAGTTCTTTCTGTGAGGCAGTGGGAGATGTGGGGCTAGGTCAAATGGGGGTGAAATTAGCTTGGTTACTGTTCCTGACACATCACCGTGGCAACGGTCTCCTTTTGTGAACAATTGAACTGGGCTGAATCTGTTTTTTGGCTCCTGGGGTGAGGTATTTGCGTGGATAAAGCTTGGCACCGGCCACGGGGGACTGAAGAGGTTTCAGGGTGGAGAAGGACTGCTGAAGGAAGCCAGTGAGAAAGACAGGGCTAGGGAGGGGGAAGCCAGGAACCAGGCTCCAGGCTCCAGGAGTCTTCTCTTTCCAACTACTGGGCACAACAGTCCTGTCTGTATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTAGGGGGCAGAGGGTACTGTGTGGACGGTGGAGAGAAGACAGGAATGGGTGACAGTCTTAGAGAGGATCATCTCTCACCAGCAAGTCTTTTTGAGTAAAAAAATATCATCATTGGTTATCTCCTTTTCCTACCTTGTCCAAACACTACTTCCATTTCTAATAGAGGACACTGGGCTGAGAAAGCCCCAGGTGGGTCTAGAGGAGACCCTTGGACACTGGAGTTGAGTCCCTGCTAGCCCCTCTCTCCCTGCGTCTTTCTGATAGGGGCGGGGATGGGAGGGGAGGCTTGTCCTACCCCACAACCCTACACAGGCTCTGGGTCAGTCCAGTAGTTCCTGCTGCAATCTAGCCGGCTGGAACCCGCCCTCCCTTTCAGGCTATAATTACTTGTGCATTTCCTGTCCCCTTCCCAGCTTGGGGAAGCTAGGTAGGGGGTAGGAGAAGGTCAGTTACCGGGACAATGAGGTCACTGGGGAATTTCTTGGGATCGGAAGTTTGAGAGGGTGGAGAAGTCCTCTTCAATCTCGTTCTCCCCTAAGACCTCAGAAAGGACGGGCCAGATTGTGTGGGGGCTGCTGGGGTGTAAAGGGGGTCAGAGGTCTGAAAGCAAGGCCCTCTTCTGCCAGGTATGGAGGCAATGGGTCTAGGCTGCTTGGAATAACTGTTTCCCCTCTCCCCACCACGCCCATCCCTATGAGTGGAGTGAGGTAGGTTCAGCCTGGACATAAGAGGCTCTCTGACCCCCATGGAGGCTGCACCTCTTGGCTCTTTTGTGGCTCTTTTGATTCGTGAAGTGTTCCTGTGACACTGCAAGTGGCAGCAGGGTGTGTGCATGCACGGGCTGAAGAAGGCTCAGAGCGACCTTGGGTGGGCCCCACAGGCTCAAGCAAGACCGGACAGTTTTGGGGGGAAGTGGCTCTATTCTCAAATCCATCCAAATAATGATAGTGGCTAAGAGTCACAGTAGTTGTGTCCCATGCCCTGTGACAGCTTCGTCTTTGTCATACTAAATGTGCTCACAACAGCCTGCCTGGTGGGATCAGTCCTGATGGTTTCAATCTTACAGATGTGAGGAGGGAGGCACAGAGAGGTCAAGCAGCTGGTGAAGGGCTCCACAGCTGCTGAGTGGCTGAGCTGCAAGACCTACCTGCAGAATACCTCCGACACCCTCTGTGTCCCTGCTCCATGCACAACCTTAGCCATGACCAAAGGAACTGGTCTGGTGGGTCCTGGGGCTGTCCCTGACTCTCTCTCCAGCCAAGCTCTGACACTTAGTGACAGGGAAGTAGGGTGGGGCCAGCCATCTGGCTAATGCCAGCACATCGTCTTTTACCTGGGATCCTTCCTGTCCCAGGCTAAGAAGATTTGGCAGGTGAAGGCTGAGCCAACTGAGGACCTCAAAATGACAATTAGGCTCATGAGTCCAAGTCCAGGGCCAGCTGTAGCTCCTATGTCAAGGCAGTAGGTATACATAAGAAATAAGAAAGTGGTGGGGTGGGGTGGCACAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGTCCAGCGTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCCACACAGAGAAACCCAGTCTTGAAAAGTCAAAACAAAACAAACAAACAACAACAAAAAAAAAAAAGCAAAAAAACCCAGTTACTGCATTAGCGTTTGCCAAGCAGTTACTGTGGGCAGCAGGCACCATCCCATGGGTTATGGGTTTCAGATTATTAACCTACTTAAATAATATGATAATAACTCTCGGGAGTATGTACTTTTATTGCCAGTCCCCTTCACAGACAAGAAGCTTGCCCACGGAGAGCTTGAATCAGCATAAGGTTACACACTCTGGCTGCCATTCAGAAACCAGCATCTGAACACAGGCATCTGGATGCCACACACATGCCCACTGCTGCTCATTAGCGGTCCTCCCCCTGCCTGGTCCCAAGTGTCCCATCCACAGGAGCATGACAGGGACACAGAGGGCTGTGGTCACAGGCTCGTCCCTTGCTTTGCCTGTAGAATGGTCCTGAGGGCAGAGTGGCCCTGCTATTTCTATGGCTGTGGCCTGCAGTGAAGACGTGAGAACAGGGTTGAACTCAGGAGAGGCGGTAGGGCTGGAAGCATGGGCTGTAGAGTCAGGCAGTTCCGGTGTGAGTGCTGTTTACCACCTGTTAGGGTGGCTTATGTAACCTTTTTTCGCTGGCTTAGAAATAGAATCCAAACACCTGCTTCACACAGAGGCAGCACCTCCGATCTAGCACCTCAGATCTTGCCTTGCTGAGCAACTGTGTAACCCTTGGCAGTGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTAGGCTTTCTTTAGCAGAGTAAAATGCCTTCTGGTTGCAGACTCTGGTGCCCATCCCTTGGGGCAAGGCAGGAAGTGACCACCTTGGTCATGTGGCTTCCCGGGTCAGGATAATTCCAGGAAGGGGTCAGTTGGTAGTGTGCTCACTTAACATGCATGGAGCCCTGGGTACTGATCAAAGGGTCAAGGTCATCCTCAGATACTTAGTGACGTTAGCCTGGACTGCAGGAGACCTTGCACCTGCCCCCCCGCCCCCCCCCCCAAAAAGAAAATAAAGTAACTGAAGAGATGGCTCTGTGCATAAGAACATTTGCTGAATTTATAGAAGGCTTGAGTTTGACCCCCAGCAACAGTGTCATAGCTACCTGTAACTCCAGTTCCAGGGAATCTAACCCTCATCTATCTTCTATGTGCACACACAAAATCTAACAACAATAGTAACCGAGTCCAGCTAGAGCCCGGGCTGTGGGCGCCACAGGGAGCTGGGACAGGAGCTAGGTTGACTTGGGCATTTTGATACAAATAACAAGAAGTCATTAGCACTCGGGCACTGTTTGTTCCAACATAGGGCCTGGCTGGATACATTCCTGCTCTGCCTCCCTTTCTGGCTCCTCCTCCTCCTCATTTCCTGTCCTTAAGTCTCTAGGGCTGTGTGTCTGGCACCGGCCTGGGCTCGTGACCCGGACAGAGATACCCTTGGGACACCCAGTGACTTCCACCCCATGCTGGGCTAGGCACTCACGTCAGACCTCGGGTCTCTGCTTGGGTAGAGGGAAAAGATGCCTCTGCTCGGATCTGCGTCTCAGAGAAAGGTCTTGGATCCCACAGCCCCAGCCAGCACTTCTCCTTGAGTGTAGGGAGGTGTGGTGGGCAGAATGGATGGAAATGAGACCGCCTTGGGTGGGAGCTCCAATTTACCCACACCTGGTTGACAATCCTGCGCCTGCGTGGTTATGTTATGCAGGGCGCTTGAATTCACATCCAGTCTTGTTTCCCTGAAAGTCGTGAGGGAACACATCATGTCTGCCTAGCACACCTAGGATGTGGGGGTGTCAGGAAGGTGGATATGCTCTGAGCTGGAAAGGATGCCTTGAGAGGGCTTGTAGAGAACAGAGCAGCCTGCCGGAAGCTGGGCATAGGCTCTCCATTTTCAGATGGATGGACAAGAGGGCTGTGAGGGCCTTCATGGCTGTTCGGCAGGGCACTTTTGCCTTGGAGCCCCTAATGGAAACATTGTTACCAAGAGCATCAGTAGGCAATGTTTCTATGGTAAGCCAGTTCCGGGCTACCAAGGCCTTCCCTACCCTTACAGGGCTGTGGCTTGCAGTATCTGCTAGAGAGAAACAAGCCTGTCAGCCACGGCCACACCTCTGCCTTTTTAAAGAGTAAAAGCTAATATGTGCACAACCATACACCAGGCAGTGGTTAAACACGCACTCTGTGCCGGCTCGTGGGGGCCCTCCAAAAGCTCGAGAGTTTCGCTCATTTACGCTTTAGAGATTCTGTACATAGAGCTTTAGTCCAGACCCTGTGGTTGGGCACAGATCTGAGCCTGAGGTCAGCCTGTAGACCCTGCCGGAAGCTGGTGTTCCCAGGCCTCCTAAGGTGTTCATGCCCTGGCCTCTCCTGAATCTTGTAGCACATCTTCTAACTTCCTTTAGCTCCACCCCCGACCAGCTACAAACGGGGCCTGTTTGCCTAGCAGCCTGAGTACGTGTGGGCCCTGGCTGCGCAGAATAGAAATCTTGGGGTTCTCACCTGCCGCACACTGGTGTGGGAAAAGGTATCTTCTGAGAGGGGCAGGGAGGGGTCCTACTCCGTGAGTCCGAAGAGCCCCCACTGACCTGCAAACTCTTCGTACTGTCCTCAG
Seq C2 exon
ACACCACTTACCAACAGCGAGGACTCCCTGGATTTCAGAGTGAGTCTGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022469:ENSMUST00000129223:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types