MmuINT0132755 @ mm9
Intron Retention
Gene
ENSMUSG00000031167 | Rbm3
Description
RNA binding motif protein 3 [Source:MGI Symbol;Acc:MGI:1099460]
Coordinates
chrX:7720974-7721805:-
Coord C1 exon
chrX:7721699-7721805
Coord A exon
chrX:7721074-7721698
Coord C2 exon
chrX:7720974-7721073
Length
625 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGTCTCCTTCCCATACCTAGTCC
3' ss Score
7.66
Exon sequences
Seq C1 exon
TGGTTGTTGTCAAGGACCGGGAGACTCAAAGATCCCGGGGTTTTGGCTTCATCACCTTCACAAACCCAGAGCATGCCTCAGATGCGATGAGAGCTATGAATGGAGAG
Seq A exon
GTGAGGCCTCCTGCCTGCACAGGGGCCGTCTCCCTGTCTGCCACTTTCTTCGTTCTTTCTGTTTTCCCTCTATGTCTGCCAGGGGCAGCGTGGCCACTCACAGGAGCATGACTGCCTTCTGTTCTAGGGGGTGGAGGGCAGCGGCAGACAGAGCCGGGCTGCCTGGGAGGCGACGACTGGTCCTGCATGAGGCGGAGAAGCCACCTGTGGATGGTTGACCTGCTCTGGGCTTAGGTAGTAGAGTCTGCAGAGCTGTGGGCCTGGCAGAGGACCGGAGAGGACCTCGTGAGTCTGCTGGGATGGACTCTGAAGCCTCAGACCGAGAGAGGTGTCTAGCCCTAATAGTCGGGCAGCTTAGAGGAGTGGGGAGGATACGTCAGCCTGAGTTCAGTCAAGATGTAAGTAGTAGCAGGGGAGACCGGTGGATTCAGGTCTTTTTGTGGGATTCCATAGCTCCTGGTGAAGCCATTCTGGTCAGCGGAGCTTGGCTTGGACGAGGCACCCAGAATTTGGTGCCCAGCAGGAATTTCTGGGCTCTTGCCTACACCTACCTGCCTGTGCCCATTCTTCCCTCATCCCTACTGTGACTGACAATTCCTTGTGTCTGTCTCCTTCCCATACCTAG
Seq C2 exon
TCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCTTTGGTGGGCGTGGTCGCAGTTACTCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031167-Rbm3:NM_016809:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(49.3=100)
A:
NA
C2:
PF0007617=RRM_1=PD(9.9=20.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTTGTCAAGGACCGGG
R:
CTCTAGAGTAACTGCGACCACG
Band lengths:
206-831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: