BtaINT0123297 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025848 | RBM3
Description
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:HGNC:9900]
Coordinates
chrX:91769034-91769886:+
Coord C1 exon
chrX:91769034-91769140
Coord A exon
chrX:91769141-91769780
Coord C2 exon
chrX:91769781-91769886
Length
640 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTGTGTCTCCCCACACCTAGTCT
3' ss Score
5.82
Exon sequences
Seq C1 exon
TGGTGGTCGTCAAGGACCGGGAGACTCAGCGATCCCGGGGTTTTGGCTTCATCACCTTCACCAATCCGGAGCATGCCTCAAATGCCATGAGAGCCATGAATGGAGAG
Seq A exon
GTGAGGTCTCCTACCTGCATAGGGGCCCTGCGTCCATCTGTCACTTGGACCATTCTGTTTTTCCCTCTGTGTCTGCTTGGGGCAGCGCGGCCACCAAGCCCCGCAGTGCCCACTCACAGGAGCGTGACTGCCTTCTGTTCTAGGGGGTGGAGGGCAGCGGCAGACAGAGCCGGGCTGCCTGGGAGGCGACGACTGGTCCTGCATGAGGCCGAGAAGCCACCTGTGGATGGTTGACCTGCTCTGGGCTTAGGTAGTAGAGTCTGCAGACCTGCGGGCCTGGCCCGGAGAGGACCTCGTGAGTCTTCTGGGATGGACTCTGAAGCCTCAGACCAAGAGAGGTGTCTGTCTAGCCCTAATAGTCGGGCAGCTTAGAGGAGTGGGGAGGAGAATTCAACCTGAGTTCGGTCAAGATGTAAGTAGTAGCAGGGGAAACATGGTGGATTCAGGTAATTTTGTGGGATTCTGTAGCTCCAGATAAAACCATTTGGGTCAAAGGAGCTTGTTCTGGAATATGGCACCCAGAACCTGGTGCCCAGCAGGAATTTCTGGGCTCTTTTGCCCACTTGCCCAGCCCACTCCTATTTCACCCCTGCCCTGTTTGACCACCAACCCATCCACCCTTGTGTCTCCCCACACCTAG
Seq C2 exon
TCTCTGGATGGTCGTCAGATCCGTGTAGACCACGCTGGCAAGTCAGCCCGGGGATCACGAGGGGGTGCCTTTGGGGGCTATGAACGTGGTCGTGGCTACCCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025848:ENSBTAT00000024034:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(49.3=100)
A:
NA
C2:
PF0007617=RRM_1=PD(9.9=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAAGGACCGGGAGACTC
R:
CTCTAGGGTAGCCACGACCAC
Band lengths:
206-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]