Special

MmuINT0132943 @ mm9

Intron Retention

Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127570697-127571264:-
Coord C1 exon
chr10:127571184-127571264
Coord A exon
chr10:127570782-127571183
Coord C2 exon
chr10:127570697-127570781
Length
402 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTTCCTTGGCTGTGATACAGGAG
3' ss Score
5.92
Exon sequences
Seq C1 exon
TTCATGCCGGCAGCTGCTGCTATGCATGGGGCTTACATCTCCCAGTACCCAGCTGTGCCTTCTTCCAGTGTTTCTGCTGAG
Seq A exon
GTAGGAGCTTTTTCGGTTCGTTTTGTTTTGTTTTGCAGTGAGGCCAGGACACATCAAGGGCAGATCTCTGAACTGTGTACTCCTCTCTCGGTACTGCCTACCGCCGGCATCCTCACTGGTGGTTGTGAGGAGAGCAGGAGGCGGCTTCATTGGTGTTTAGCCAGCCTGCTCTGTTCAATTTAGACAGGGATGCTGACTTCAGCTGCCTCAATACTCTGAAAATGAGCAAATGCTGAAGTATTTTCCAAGGTAGCTGGACCACTTTGCCCGCTTTCTGGCAGTCTGGATGTTGGATGCACACATGCGTTGGGGGCGGTGTGTGTGTGTGTGGCTGAATTGGGGAGGCTTTAGTGGGAGGTGCGTGTAGGAATGCTTCAGTAACTTTCCTTGGCTGTGATACAG
Seq C2 exon
GAGAGCAATGGCCAGCAGAATCAACTGGCAGTGGAGCCCCCCTCAGACCACGGGGTCTATCCTTTCCAGTTCAGCAAATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-Rbms2:NM_001039080:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.149 A=NA C2=0.538
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000089664f4062A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000075585, ENSMUSP00000089664, ENSMUSP00000096742
  



Associated events






Conservation


Human
(hg38)
chr12:56588375-56588931 
ALTERNATIVE
HsaINT0138668
(RBMS2)
Human
(hg19)
chr12:56982159-56982715 
ALTERNATIVE
HsaINT0138668
(RBMS2)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:57167657-57168069 
ALTERNATIVE
BtaINT0123465
(RBMS2)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr11:1912689-1914670 
LOW PSI
DreINT0125492
(rbms2a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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