BtaINT0123465 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57167571-57168150:-
Coord C1 exon
chr5:57168070-57168150
Coord A exon
chr5:57167657-57168069
Coord C2 exon
chr5:57167571-57167656
Length
413 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CTGCCTTGCCTGTGGTACAGGAG
3' ss Score
6.09
Exon sequences
Seq C1 exon
TATGTGCCAACAGCTGCAGCTATGCAGGGAGCTTACCTCTCCCAGTACACCCCAGTGCCTTCTTCCAGTGTTTCAGTTGAG
Seq A exon
GTAAGAACTTTATAGTCTCTTGGGGTTGAAAAGGAACAGAGGCAGGTTTTCCACTGATCAAAATCTTCCTCTCGCAGTGATGCCGATTCTGTGTTCATAAATAGCTGGTGGGTGTGTGAAGAATACAGGAAGGAGAGAGACTTAGTGCCTTTGACTGAGGCCCTTCCTCTCGTTTAGCCGGACAGCAGTTAACCCCAGGGTGCTGGCTTGCGTTGACCATTGTGCTCTGGGATGAGGATAGGTTGCTCTAAAGTTGGGAAAGTGATGCTGTGAGTGTGCATGTGTGTGTGTGCACGCGCACAGGTGTGTGGCAGGGGGTAGGTCGGGGAGGGCACTCAGTGTAGTGAGGCTGCTTCAGTGGGAGGTGAGGGAAGGATGTGCAAGTTGACTCGCCTGCCTTGCCTGTGGTACAG
Seq C2 exon
GAGAGTGGCAGCCAGCAAAGTCAAGTGCCGGTGGATGCACCCTCAGAGCATGGCGTCTACTCTTTCCAATTCAACAAGTAACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]