MmuINT1029670 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128133641-128134208:-
Coord C1 exon
chr10:128134128-128134208
Coord A exon
chr10:128133726-128134127
Coord C2 exon
chr10:128133641-128133725
Length
402 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTTCCTTGGCTGTGATACAGGAG
3' ss Score
5.92
Exon sequences
Seq C1 exon
TTCATGCCGGCAGCTGCTGCTATGCATGGGGCTTACATCTCCCAGTACCCAGCTGTGCCTTCTTCCAGTGTTTCTGCTGAG
Seq A exon
GTAGGAGCTTTTTCGGTTCGTTTTGTTTTGTTTTGCAGTGAGGCCAGGACACATCAAGGGCAGATCTCTGAACTGTGTACTCCTCTCTCGGTACTGCCTACCGCCGGCATCCTCACTGGTGGTTGTGAGGAGAGCAGGAGGCGGCTTCATTGGTGTTTAGCCAGCCTGCTCTGTTCAATTTAGACAGGGATGCTGACTTCAGCTGCCTCAATACTCTGAAAATGAGCAAATGCTGAAGTATTTTCCAAGGTAGCTGGACCACTTTGCCCGCTTTCTGGCAGTCTGGATGTTGGATGCACACATGCGTTGGGGGCGGTGTGTGTGTGTGTGGCTGAATTGGGGAGGCTTTAGTGGGAGGTGCGTGTAGGAATGCTTCAGTAACTTTCCTTGGCTGTGATACAG
Seq C2 exon
GAGAGCAATGGCCAGCAGAATCAACTGGCAGTGGAGCCCCCCTCAGACCACGGGGTCTATCCTTTCCAGTTCAGCAAATAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types