DreINT0125504 @ danRer10
Intron Retention
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25835946-25836200:+
Coord C1 exon
chr23:25835946-25836026
Coord A exon
chr23:25836027-25836112
Coord C2 exon
chr23:25836113-25836200
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GTAACCTGATGCCACTGCAGGAA
3' ss Score
4.47
Exon sequences
Seq C1 exon
TATATGCCTGCAAACACAGCTATGCAAGGGACCTACATACCACAATATGCCCAAGTGCCTCCTTCAAGCGTTACAGCCGAG
Seq A exon
GTAGGAAACGCTTACGTGCTAAATTATGTTTTCAAGCCTGAATCCCTGCAATGCATTATCGGTAATGTAACCTGATGCCACTGCAG
Seq C2 exon
GAAAACAGCGTGCAGCAGCAGCAGGTTGGCATAGAGACGCCCACAGACCACACAACATACTCCTACCAGCATGGCAAATGAAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150:ENSDART00000060059:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATATGCCTGCAAACACAGCT
R:
CCTCTTCATTTGCCATGCTGG
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]