RnoINT0125321 @ rn6
Intron Retention
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2554696-2555219:-
Coord C1 exon
chr7:2555139-2555219
Coord A exon
chr7:2554781-2555138
Coord C2 exon
chr7:2554696-2554780
Length
358 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTTCTTTGGCCATGACACAGGAG
3' ss Score
2.58
Exon sequences
Seq C1 exon
TTCATGCCAGCAGCCGCTGCTATGCAAGGAACTTACATCTCCCAGTACCCAGCTGTGCCTTCTTCCAGTGTTTCTGTTGAG
Seq A exon
GTAGGAGCTTTGCCGTGAGGCCAGGACACGTCAAGGGCAGATCTTCGTGCTGTGTACTTTCTTCTCTCTCGGTACTGCCGACATCCTCACTGCTGGGTGTGAGGAGTGCAGGAGGAAGGTGTTTAGCCTGCCTGCTCAGTTCAGTTCAGACACGGATGGTGACTGCAGTCGCCTCAATACTCTGAATATGAGCAATTGCTTAAGTATTTTCCAAGGTAGCTGGACCACTTTGTCCTCTTCCCAGCAGCCTGGATGCTGGGTACACACCTGCGTTTGGGGAGTGGCTGAACTGGGGAAGGCTTTAGTGGGCAGTGTGAGTATAGGAATGCTTCAGTAACTTTCTTTGGCCATGACACAG
Seq C2 exon
GAGAGCAATGGTCAGCAGAGTCAACTGGCAGTGGAGCCCCCCTCAGACCATGGGGTCTATCCTTTCCAGTTCAGCAAGTAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076:ENSRNOT00000048848:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]