MmuINT0132970 @ mm9
Intron Retention
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116481864-116491983:-
Coord C1 exon
chr9:116491856-116491983
Coord A exon
chr9:116487821-116491855
Coord C2 exon
chr9:116481864-116487820
Length
4035 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CTTCCCTGTTTGTCTTGCAGACC
3' ss Score
13.38
Exon sequences
Seq C1 exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCACCGGCATACTCCTTCCAACAGTCCAA
Seq A exon
GTAAGTCCGCGCTGTGCTGAGCGCCTCCGCTCAGAAGCAGAGATACAGAAGTCCTTTTCTCAGAGTGTTTCCATTTGTTTTGGTTTCACAGAAACCACCGTAAACTTCGTGGTAGGCAGGGCTCGCTCATGGTCACGTGAGCTGCTCTCAGTTGGCTTTGGGTGAGTGGATTTTCCAATCTTGGCTGTACTTGGCCTTGTGTATGAGTAATTGGTCATCATGGCCCTCTGATTTGGGACGGTGAAAGGCTGACCATATGCTTCTTATCTTCCAACAAATCAGTGTCCAGACAAGTTAGAATTCCAAAAACATCAGGAAGAACCCAGCAAAAGGAGGCACTCAAGTTTTGCGTCAATACATTGGCTCCTATCCTATTGGTTAATGCAAGTCACATGATCCAACAGTTGCTGAAGGTGCTCACTTCCAAAAGAAAAGCATTTCAGTCATTTAAAAAAAATCTGTTCAATGCTTTTGGGAAAATTGTAGTATTCCCACCTTAAAACAGACATTCAGTTCTTAATCTCTTAAACAATTACAGTGACATTCGACATTCTCATTGCAAGTTGACTTTGAATACCTGGGCAAATGGTCATGTAAATGAGAATATTGTTAAATATAGGATAGAGCTATTAAGCCCTCCCTGCCCAGGAATTAAATAGGAGAGGAGAATAACTAGGTACTCAGAATTACTCTTGAAAAAAATTTAATCACCCATAAAGCAAATTACATTTGTCTGTGTATGGAGCAAATATGTAGATTACGTTCTGAGGGCTCTGCTCTGAAATAGAAGGAATTAACAGCAGGAAAGTATGTATGGAGAAGCCTTTGTGAGCAAACTGACCAAGCTGGTGCTTCATGACCAAACCTCTGATGACCGTAGTCGATTCGGATGAATCTGCTTGCAGAGTGTTGCTCTCTGTTCTGTCACCCCTGAAATATGGAAGAAGCTGAACATATCAGCCATGCCTGTAGTCAACAGAGCAGATGCATGGATAAAGATGTGTGCTCTACACCCACATGATAGAATTTTATCCAGACATAAAGAAGAGTAAAATGATGTTCCAAAAAAAAAAAAAAAAAAAAAAAAGATTGGATTGGAGATCATGGTAAGCAAAATAAGACAGATAGTATCCTTATTTTCTGTATCTTTATTTTCACATGCAGAGTCTGGATTTACATATATATACCTATACACATACATGAATACATACATCTACATTCACAAGTTAAAAATATAGAATTTATGTTATTTCTGTTCCAGTGTAACGAAAAATAAATATCTCCAAAAGGATTGAGCTAGTCCTTGTTAGGGAAGATTTCTTCAGTACCCTAGCTTTCACAAAGTGGAAGGCTCTCCATCCCAACATAGTTGGCTGATGAACAAGCCCTTTCTTGGGGTCATTATGCTAAATGCGATGTAGAGATCTTTAAGAACTTCCTAATGGCTGACATTTCTCATCAGACACTGACTAACCCTCCTGTGGGGTGTGAGGTGCAGATGGGGCCACCTAGTACCCCTGAAAGGCAGCATGATACATTATATACATCTAACATTAAAATGTCTACAGTCAAGCAACTGCAAACCACAGGTAGGGTCACAGGGACACATTTGAGAAGCACAAAAATAGGCTTATGCATAAAAAGTCTACCACAGACTACTTCCCTTGTCCACATTTTACTTTTCAGGCTAAAACAAAGAACATGGGGCTAGAGAGGTGGCTTAGCAGTTCAGAGTACTTACTGCGCTTCTAGAGACCAGTGTCTTGTTTCAAGGGTCCACATGGTGGCTCACAGCTGCCTATATCTACAGCTCTAGGGGATTCTGGACACCCACACAGACATTTACACACACACACACACACACATATATATACAGAGAACTTTGAATGATAGACTGAGGAATTTCCCCCCATTACTGATGCAGAGGGACTATCAGCTCTTACAACAGAAGGAGGTCATAGCTGTGGCTTATTCTGGAAATTATATGAGAATTCCATTCCCCACTGAGTTACCACTTATTCCTTGTGCTGTTATAAAACCTTTAAAATAGCTGGAATCCAGGGGCTTGTGAGGTGGTTCCATGGGTAAGGGAATGTGCTCTCAAAGTGGGAGCACCTAGTTCAAATCCCTGGCACCCACAGAAGTAGCAAGTGTGGACAAATATGATTGTTACTCAGCACTGGGTGAACCGAATCAGACATCTCATTACAAATCAGCCAACCAGCCAAGCAGAAAGTGACCTTCAGGGTCAGTGTCTCAAGGCAATACAGCAGAGACCAATAGGGGAAGACATTCAACTTTGACCTTTGGCCTCCACATGTGCACAACCAAATGCACACACACAAGTGTGCAGACACACAATATATACATACAAAATTAAAAGCTAGGTGTTTGTTTTTTTACATTTTTAATTAAAACTCCTTTCCCTTTCCTTTCCTCCCTCCATTCCTTCCATCCTTCCCCATCTCAAGTTTATAGCCTCTTTCTTCTTTAATTATTATTGGTCATCCAGTACAAACAACAAAAAATGGACTCAACATGCTATAATATATATTTATACATGTGTATATAAAAATAATGAAATAAAAATAAAAACTTAGATGTAACCAGATCCCATAGAGCATATCTGCAAGCCCAGTTAAAGTCCCAATTGCCGAACCAGGAGTCTTTGCCTCCAGTTCCATGTTTGTGACCTCTGTGTTACCATTCAAACCTTAAGGACCCTGTTGCACTCATTTGAAGTTATGTGATCACCAGTATCTATAGAGTAAAACTTGGGTCTCTGATGAAAGAGATTTGCCTTCATCCACTACAATTAGGGTTAGAAAGCCCATCGTAGACCCTGATGAAATGGCACTAGGATCGGGGCTTTCAGCTGAAAGGAGCGCTGAGCTGTGCAGTCTGTCTGTCTACCCTCCTCACAGCAAGGTAGATGGACTAAGAATCCTCTGATTGTCAAGTAACAAATAATACAAAGTATGCTGCAGGGGTGCCCAGTGGCCCTTCCCTTCTGCTGTGGCTTGCTTTAAGTGTGTCTACTAAGGATCCACGGTGGACAGCTTGGTCTCCAGTAAGGACAGGGAGAGGATGACAGGACTCATACGAGGCAGAACCTCATGGCAGATCACAGTGCTCCTGAGTTAGAAGGCACTGATGCGGTTGTCATGGCAATCTGAGTTTTGACTTAGATATGTTTAAGGACCCCTGATGCTTTTGCTAAGGTTCCCAGCATCTACATGACTGTTCACAACTGTCTTTTTCATTTTTAATTTTTTGATAGGATATTTTCTTTATTTACATTTCAAATGTTTTCCCATTTCCAGATCTCTCCTTCAGAAACCCCCCATCCCATCCCCCCTCCTCTTGCTCCTCCACCCACCCACTTCGTCTTCCTTCCCTGGCATTCCTACACTGGGGCATCGAACACCCTCAGGCCCAAGGGCCTCTCCTCCCTCTGATGCCAACAAGGCCATCCTCTGCCACAAGTGCAGTTGGAGCCATGGGTCCCTCCATGTGTACTCTTTGGTTGTTGGTGGTCCAGTCCCTGGGAGCTCTGGGGGTTCTGGCCTGTTGACACTGTTGCTCCCTCCATGGGGCTGCAAACCCCCCTCAGCTCCTTCAGTCCCTTCTCCAACTTCTCCATTAGGATCCCAAGCTCAGTCCAGTGGTTTGCAACCATCTTTTAACTCCACTTCAAAGCAGTCTGATGTCCTCTCCTGGTCTCTGACAGTGCAGCAATCATATGCTACATTTTCATAATACAGTCATGCACTTATACCCACAACAACAAAATAAGTAGATCTTTAAAAATAGCTAAGTCCATCAACTTCGGTTTTGCCATGAGCAAACTCTTGCTCAAGTGTGGAATTTATAAGAAGGTAACAGAACTGAACCCCCTCATAGGCTAGTTAATATGCCTGATACACTGCTTCTTTTAGCATGACGAAAAGCTTGGGCTCCTCTAACAAGATGTCCCAGGAAACAACGGAAGAAAAACTCAGATGTAATAACCTCTCTTCCCTGTTTGTCTTGCAG
Seq C2 exon
ACCATAGACAGAAGTGAGGATGTCTGCCTGAACCTTTACCTTCAATGAAGAAACGTCACTGAGCAAGAAGTTAGTTGGCCTCCGGTTTGCACAGGCGCCAAGGGAAAGCTTTCTTCTTCTTTTATTTTTATTATTTTTTTTATTATTTTATATTTTACTCAAAGAAAACAAAATTTTTATGTGCTGTGCGAATGGTTCCTCCGTGTGGTCTAACACTTATTTTTGTCTTTTTTTTTTAATTAACGGGAAAAAACAAATCCCAGAAAGGGGTGGGGGATGGCAAACATCACAAGTTGATGCTGTCTTTGGAAAAACAGAATTTGCCTGAAGGTATAAGTAGATTTGTTTTTTAAAAAGTAGAAACACCAATGTCAAGAGTTGGGCAACCAGATGTTTAAGAAAATTATTTTCCTCAGTAATTAAGCTATTTTTTTCCTCTTCTTTTCTTTTCTTGTTTGAACCTCCTGGGTTTTTTATATATATATAAATATTTTATGTTTTCTTAGAAATATTTAGGTAAGGTTTATCTTGAATCTTAATTGCCTTAATTTTTAAGGACGTCAAAGGCTCCAGAGGCATGCTTTCAGCGTCTTGTTAAAAAAAAAAAATCAAGAAAGAATTGAGTTTTTGTGCCAGCCTTCACTGACATAGAAGATGGAGACTGAGTTTTTAGGGTGGAAAAGAAAAAGAAAAAAAAAAAAACAAAACTGTACAGTTTGAAGGAAAATGTGTTTTCTTCATTTGAAGAAAATTTGTTGATAAAAGAAACCAAGGCAACCGCAAGAGTTTGGAAACGCTGGGACTTCTCATGAACTTTGACACAATCACTCTAAAAGGCTAAAAGACATTTTATGGTAAAGTTATTCACGTTGGTTTTAAAAACAACTGCATTAGAAATAATGCAAGTTTGGGGGGCAGAATGCAGATTTTTTTTTTTTTAATTTACAAGAGCGTGGTTGCTAGCGAAAGCGTCAGTGCTTTTTATCTGCAGTTTTTTCTATGAGCTTTGTCAGGTTTTAGTCAGCTTTGCTTGTCACATTGCAAAACCTAGCATAAGAGCACTCAAAACAAAACTTAAGTAGATAGACGCTTATGGTCAAAAAGTGCAAAAAAATAAAAAATAAAACAAAAACACACACACAAAAAAACAAACAAAACAAAACAAAAACAAAAAAAAGCAATAGATAGAGAAATTGTTGACAATTTCTGTAGTCTTTCTTAGTTGTGGTCAATTGCAGCCTATGGATGGCCTATTTTATACCAAAGATGAAGTGAGACCCTGTTACAGGCGTGATGGTAGACACTGCTTTTCTTTCTTTGAAGTTTTGTTTGACCTACATGGCCGGACCAGTTCTAACTTCATTTAAACTACCTTCCACTAGTGTGTTACATACCACAAAAAAAGAAAAAAGAAAAAAAAAAACATTGTTTTTTCTAAAAATGTGTATTTGTCAATAGTTGAAGTTTGTTCCTACCCTGCTCAGCAGTTTAAGCATGAAGAATCTGAGACCCAGTGGATGAATGGATGCAGGCGGCTTTAAGTCCTGTGAGCTTTGCTATCTCTTGACCAGCGCTCTCAGCAGTGGATCGACGGCCACCAATACACCCCGTCAGTTGTTCAAGAGATTGAAATGCCCTCATCTGAACTTCAGGCTAAGGATGCTTCCTGAAGGATGCTTCTGATGTCTGAAAGGCCATTTGTCAGAAAGGCTGTGATGTTCGGAGCTGTGGGTTGTGGTCCCCAGAGAAGTTCTCACGAATTGGTAACAATGTTTCTTTCAAACACTGACAGTAACCAATTTTTGTCTTCTCACCTTGGTTTAGTTATCAGCCCTCCTCACACAGGCGCTTTGATTCTGTGTTTGGGGAGGGAGTGTTTTTCTTTTACCTCCTCTGCCTGCTGTGTTCTCATATCTTGATACTGACAGGAGAGACAACACAGCCCTCTTTAAATTTTGGTTTAATTCTCCAAGATAAGTGGGGCCGTTAAGATCTAAGACTCCTTTGAGTGCAGTAGGGGCAAGCTCTTAACACCTTAGTTGACAATCAATAAATTTTTTTCAACAAGAACCACAAGAACTAGGGGTTGATCCAGCACCGAAACCAAAGGAGATATTTGCACTTAGAATAATGCAAAACTTGGCTTAAAATGATCTAAATTGGCTTAGTGAGAGAGTCCTAACTGTTCTGACTCATCAGATCTGGGATCAACGGATCTTGTTTTCCTGGAAGTTAGAAGCAGTAGCTTGGAACTCCGTTCATGGGACCATTCCCAAGAACTGCTTTTGAATGAAACTTTGAATCAAGTAGGCAAAGCTCTTTTCTGCAGGTTACTCCATCTGAGTGCATAGGGAGGACACAAAACCGAGCCGCTGGAGAGGAAAAGAGAGTAGGCTTTCAGAAACAAAGTAACTTGTAAGGCAAATCACAGTCCCATTAGGCCCCACAACTAATGAGTCTGCAGGTCCATATTCTGCTGTCTCACTAGACCCTCCTTCTCTTCTTTGCAACCCTGTGAACTGAGAGCTCAAACCCAGAAAGTCATCTTGTATGTTGGTCATCAAACTAATTACAGAACAGTATCCAAGGAGACAGCATCACACTGCAGAGACCTTGTGGGCTTCGCCTTTATCCTAATGTCTTTCCCTGCTTTGGAGGGAACCTGAGATGCCTACATCCTTCTGTCACACCAGTCAGCTCCCTGTGTGTTGGAAGGGTGGACTTGAACATGTCTATGGAAAGCAAGCCCTCAAGTTCCAGGGGCTCTCAGAAAACTCACTGAGACCCAACTTTCTCTTTCTCCTTCGGCTTCTCTCAATTCTCTGTGTAAGTGAGGATTATCCTGGGCATCATTCATTTGAATATGAAACCAACATACTTTCTTGTCCTTTCTGTAAAAGAACAAAATGCCTGTATTCACGTGATACAAAGAGAGTCTCATTTGCATTACCGATAATGAGGCTTCAAGGTAGCTACCATGTGGCAGCTGAAGGTGCCTAGGGAACTTCATGCTCAAAACTCCTGTCTTACATATGTAGTCATTCTGAAACATTTCTTTCAACTCTAAAATTTTCATGATCTCTTTTCTTTTAAGCCATCTCAGGCCAAAGGAAATCATTATGTCATCTTCTATGTTCCTGTGTGTTTTATGTTTGGGCTGTCTTGATAATGCCATTCCGTAAAATCTTTTGAGAAAAAGAAAAAGTGTGTATTCAAATTGGCTCTCTCTTCTTCTGTCATTTTTACCTAAGAATTGTTTTTTCAATAGCCCAATATAAAAACAACACCCCCACCCCCCCAAACCTTATACGCAATGTGTGCAGTGCAGATACCTGAATCTCAACCTAGTCACCACTACACATGGTAGTCCTCATGACTTAGTACTACAGTCATTTTTAAAACTAAAGTAAAATTCTAATTCTTGAGATTGCCAAAATATTTTGATTTTATTCTCTTTCATTACCACATACTGGATTTAGGAAACCAACAATAGGTACAATCCAAACAAGATAAATTCCGAGTCATCCAAATGCTACCTATTTTGTCAGAACAGTGTTCTCTTTGAATAATGACCAAGATACCAGGAGAAGCAGAATGTGTGGAGACTGCTAGCTGTTTTCACCTAAGGACCCCAGGATAGAACCTTCATGAGCTAATGGTAATGTCAGCAGGTGCTGAAGATTAGAAATAATTACTTAGTTTTTTTATATTTTAAATCTTTGTTTAATGGTTGAAATATCTATGAAAAAACCTACACATCTTTTCTATTGACTTAAAAATCCTCTTCACCGAGGAGTGGGATTTGGTCTCAACAGGGTCCTCACGTTCTTCATGATGGAGGTGTTTGGGTGGGACATCTGTGTAGACTATGATGTTAATAGGCTAAAACTACTCCTGACAATCTAAGCTCATCTGCATGAGTATGCGCACAACTCCAGGAGAGCTGAAGACTGAGGAGTAAGCCTTCTGTGGGCCTCAATGGAAAACCTGTGATTTCAACTTGGTGAGACAGCAGGATTGAAAGTCCCCTGTAACAGCTTTCAGCAAGACAAGCAATCACACAGCAGAATATTATAGAACCATCTCACAGAACCTTGATCTGGTTTTGTTTTTTTTTTTTCTTTCTTGACCACAGTGTGGAGCAAAGAAAAAGATTTCTTTCTTCCTTCCTTTCTTTCTTTTCAGTTTTTCCCTTTTGTGCCCTTGAGACTAGTATGCTGAACATTTATTTTGAGCCCACTGGCCTTGATAGATTCTCTGGAACCCCAGGAATAGCTGGATTGGCAGACTCCTTGATTCCATTTCCTTCTTGTGGGGTTTCTTTCACCCATGCATCGACTCATTTTACAACTGCGGTGTTGTAAAGTAGTTGAGCCTACCTTAAGATTAAGATTTCTTACCCATACATAAGTGGTCTGTCCTGGCCAACCTTTGTGATGACTTGGAGTTTAGAAAAGAACAAAGGCCGAAGCTCCAAGTGACTCCATAATTTAAGAAACTGGGTTCAGCGCAGATTTCTGATTTCTATTGTCTTTGGGTAAATACCCCAACTTATAACATGCAGTCATAGTCACTGTCACAGGAAGGGCTGGGTGTCTTCTCGACAGTAACAGTCATGAGGTTCTGGGCAAGAAAACAATGTTCTGGGGGATTTGCTTCAGAACTGAACAGGGGGAGAGGCTAGATGGAGCTTGGGGGTTCAGGGGGAAAATGCAAGCCCAAAGTCAACTGGGAGATTTTCTTAACACTACTCCATTTGAAAGAAACACAATCACTGTCAATGTTCAAAGGGCTAGCTAACTAGTTTGTGGGGGGTGTTTCATCTTTTCTTCTCTATGACTGATCCTGTTAATCTTAGCATCTCACTGCAAGGGAGGACAGAAGAAACCCCTGAAAATAGCAATGCACACCAGTCTGTTTTGCTTTCCAAGTACTGATGAATCAAGGGAGCTTTAATCATTATTGAAATTAATGTTCACACATCATACACTATGAAATTCAACAGTCCATACATGTCCATACATGTCATTTTCCTATCCATCACACATAATCGAGAGTTGGCTGCATTCTTGTAAAACACAAATGGAAATATTGTAAGAACAAACCTGGCTCCCCTTAGAAGAAGGCTACTTTGGCTCCATTCTCTTGGCTGAAACTCAAACCAGGAAAAAAAGATACACACATTCTCTATCAGGAGAAAATAAGGTCATTTCGACTAAATACACAGTTTTAATCCCCTTCTTTTGACTACAAAAAAATTTATTTTTGTTGTTATTTCTATTTGAACCTGTTTTACTGTTTTAAGACTGAAAGTTACTTGTATCCTGAGGCATAATTTTATGGCCATTATGTACCTAAATAAAAAGTGTAACATTAGTGTTACACTTTGGACTTTGAAACTTCTAGTTCAACATTGTAGATAAGGATGCTCTCTCCTCCTCCCCAAATGTGTTATGCTATGTCCTCACATGTAAAAAGAAGTGAGCTGTTCCATCCCTCTTAGGAAGAGTAAAATTGTTTCAAAGAGACATTAGGTATCTGAAATTATATTGTTTTCCAGTCTGGAAACAATTGTCCCCATTAACTTAAAAAAAAAAATGGAATCTTTAATTTTTCAGCTCTGGGTGGAAATACTTCAGTTTCAAGGAAAACTGTGACAGGGCTTCCTCTTTAAAAGCCTTGGTTTATGTCGTCTTCAACTTCATGGACCTCCTGGAATACCCTTTTGAGATTTTATTTAAGGGCATCTTTGTATTGCTGTCTCTGACTGTCATGGAGAATTCTGTAATCCTATGGTGTTTCTGGTTTTATCTCTAAGTTCTTTCATGTGTATCATGGTCAAGTTAGATACCATTTCCCCTGTTTCCTGGGCTCTCTGTAGATCAGTGGATATTAGGTTTCAATTTCTGTTTTCTTTGATGAAGCTTTCAATAAAAAATGGAAATAAAATCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-Rbms3:NM_178660:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.998 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: