MmuINT0135419 @ mm9
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61265515-61265968:-
Coord C1 exon
chr11:61265762-61265968
Coord A exon
chr11:61265644-61265761
Coord C2 exon
chr11:61265515-61265643
Length
118 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ACCTTCTTCTCCACCTTTAGGAA
3' ss Score
11.75
Exon sequences
Seq C1 exon
GAGACCTGTGCTGTGAGGGCAGAACGTCTGCTGTTGGTACGAATCAATGCCTCCGGAGGCCTCATCCTCAGGATGGGCGCCATAAACCGTTGCCTGAAGCATCCACTGGCCAGGGACACACCCGTCTGCTTATTGGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTTTTGGACCACTTGCTCAGTGGCTTACCAAGCCTG
Seq A exon
GTGAGGGCAGGGCTGGCAGGAGGTTGCAGAATGAGAGCCCCAGGCTGACTCTGGGAGGGGAGCTGAGTTTCTGGGGATGTAGAAAAGGACCGCCTGATACCTTCTTCTCCACCTTTAG
Seq C2 exon
GAATCTGGTGACAGCGGCAGGCCCAGAGCAGAGGGGTCTCTGCCTGGGATCAGATGGGGCGCTAACGGCCTCACGAGGGGTATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAGGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086-Rnf112:NM_009548:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0226314=GBP=PU(17.3=69.6)
A:
NA
C2:
PF0226314=GBP=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGTCTGCTGTTGGTACG
R:
CCATCTGATCCCAGGCAGAGA
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: