RnoINT0127587 @ rn6
Intron Retention
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47722646-47723089:-
Coord C1 exon
chr10:47722883-47723089
Coord A exon
chr10:47722775-47722882
Coord C2 exon
chr10:47722646-47722774
Length
108 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
ACCTTCTTCTCCACTTTTAGGAA
3' ss Score
12.25
Exon sequences
Seq C1 exon
GAGACCTGTGCTGTGAGAGCGGAGCGTCTGCTGTTGGTACGCATCAATGCCTCTGGAGGCCTCATCCTCAGGATGGGAGCCATAAACCGCTGCCTGAAGCACCCTCTGGCCAGGGACACACCTGTCTGCTTGCTTGCTGTCCTGGGAGAGCAGCACTCAGGAAAGTCCTTCCTCTTGGACCACTTGCTCAGAGGCTTACCAGGCCTG
Seq A exon
GTGAGGGCAGGGCTGGCAGGAGGTTGCAAAATGAGCCCTAGGTTGGCTCTGGAAGGGGAGCTGAGTTTCTGGGGATGTAGAACGGACCACCTTCTTCTCCACTTTTAG
Seq C2 exon
GAATCCGGAGACAGCACTAGGCCCAGAGCAGAGGGGTCTCTGCCTGGAATCAGATGGGGTGCTAATGGTCTCACGAGGGGCATCTGGATGTGGAGTCACCCCTTCCTGCTGGGAAAAGAAGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364:ENSRNOT00000003228:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.209
Domain overlap (PFAM):
C1:
PF0226314=GBP=PU(18.9=69.6)
A:
NA
C2:
PF0226314=GBP=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGGGAGCCATAAACCG
R:
AGGAAGGGGTGACTCCACATC
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]