MmuINT0137561 @ mm9
Intron Retention
Gene
ENSMUSG00000058900 | Rsl1
Description
regulator of sex limited protein 1 [Source:MGI Symbol;Acc:MGI:3044162]
Coordinates
chr13:67278001-67284434:+
Coord C1 exon
chr13:67278001-67278096
Coord A exon
chr13:67278097-67282684
Coord C2 exon
chr13:67282685-67284434
Length
4588 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TCTCATCTTTTGCTCAACAGGAA
3' ss Score
10.49
Exon sequences
Seq C1 exon
GTCTTGCTGTCTCTAAGCCATTCCTGGTGACATTTCTGGAGCAAATACAAGGGCCTTGGGACATGAAGAGACAAGGAACGGCCCCTGTGTACCCAG
Seq A exon
GTATGTAGGAAAGTGGGCGTCAGGGGACAGAGTTCAAGTCCAAAGATCCAACAGCCAGGCTTTCCCATGTGCCTTGAAATAATGTATTATGAACATCATTCTTTAGGTCTCTCCTTCACATCTCTCAGACATTTATGGTGGCTTAAGTCTCTTAGGATTTATATTTTGCAAACAGTGTGCCCTGTGTATGTTTTTACATGGACTTCCAAGATTTTTCTTGTTGCTGAGTCTCTATTGTAATGTAACACTCGGGGAAATGCAACTGAGTATTGGTCAGACCGGGAGTCACTTTTTTGATGGTGTTAAGGCAGACTTGTGCCAGAAAGCTCTCATACTGAAGTGAGCATGTCTTGGTTAATAAAATCAATGATATGTTCCCATGACACAGAGGCAGGCAGAAGCAGGGTGCTCAACAATTTCAGTTCTGTTGATTAGGACAAATTGGGCTGGGGAGCCGTTGGATAAATTCAGACTAACAGGAGTCCCTTTGGACAGTTCATTTCTCACTGATCTTAGGTAGCATCTGTCGAATATTGTCTCACAGTCTGCTGAGGAATTCTGCTTATAGAATCAGACCTAGCTCCAGGGCAGAAATTAGCTTTGTTAGGAGGAGGAGAAATGAAAGCAACGGACAGGACACGGACATTTGAACTTGCATGTAGTTTTCATATCATTTGGATGGCAGGTGTTGGCAAGTCCTGTTCCCCATGCTTCCTTATCCTGAGATGAGGCTAGCATACATTTCCTCTGATAGGTCTGTGTCCCATTGGACAGTGTGCTAATAGTAATCGTGTTCATCTACCCTGGATGTGTCCTGTCATGCAAGCTAGGTGGTGTGTTAGCCTTCTTCACTCCAGCGTTCAGGTTTGTTAACTAGTTTATAAACCACACCGGATTTTGAATATTATGCCATACTGAGTAAACTGTAAGGTGACTTTAAATTTGTTTGAGCTCCCTGTTTTAGGCTAAACGTTGACATGTACAGAGGACTATATAATGGAACGTTGGTATTAGTCGCTTACTCTAGTATTGTCTGTATGAATGAATTACATTTGAATTCAGCATGAATCCAAACACAATTTGGGCACATTGACTGTCACTCATTAAGTAGATCATCATTACCAATTATGGCTTAATTATATTTGCTGTGGCACTTACAGTGAATTAGTGACTCTCATCAGATTAAAATTTTAATAAATGAAAGTAATTATCTCTATTAAAAATTTCAGCCTCAAAAATTACAGTTGTTAAGACTGGTTAAATGGCTAACTGGTTAAGATCACTGGCTTCTCTTCCCGAGGAAGAGTTCAGTTGCCAGCGTCCACATGGCAGCTCCCAAGTGTTTGTAACTTCACATCCAGGGGATCTGACACCATCACACAGACATATATGCAGACACGCATTTAGCAAAACACCAATACACGTGAAATAAAAATTAAATTAATAAAAAATTACAGTTTCTGAAGTGCAAACCTCTTATCTCTAAATAAACTTGAACATAAATACACCCTGGAGGAGCTGAGGGCTTCACTGTCCTGATCTCTTTATGGTGCCCCTTTCCACAGTCCTGGTCAGTCCTCCAGACAGTCTCTGTGCCTTGTTTTATTTCATCAGGAAATAATACAGAAAAGACAATAGTATGCCTGGCCTTTCCAAGAATAAAAAGGCATACAAGTAATTCTCATTTCTTAGCATGACACCATTTTCCACGTACTTAAAGTTTAAGAAAGTTAGCGAAGACATAGTGACTAGATAGACATCTTTAAGTCAGAAGTGTTTTCTAACCTGAATAGAAGTTTATAATGTAGGAACATGAGTAAATTTTGACTACTAAATGTATTTTCTTTTAGTCTCTTTTATTATAATGCCTGTGTTCCATAGTCAGACGGAATGTGACCTAGCCTCATGGTTTTGTACTTTTGTCCCCCTCTTTATTTATATGATGAGTATTATCTTAAGTAATTTTAATCTTTTCATTAAAGGTATAATTTCAAATGTGGATTTTTTGAATCTTAAAATAGTTACACTGACCTACACAGAGAAAATTTATATGCCAGCAAGAGGTTTAGAGATGTCAGTAGACTTGGAAGAAAGGCATCTTTTGTGAACAAAGATGGGAAGGAGAGTATAGCAGTTCAGTCTGTAACTGAAGGAAGAGTCAATTGACTGACCTGGCTTATTGAGTCCATTTTTGAAGGAATGTAACATTGAACAAGCCCAGCTGTGATTGTATTTAGCAGGCACAGCTAGACTTATGAAGATGGTAGTTGTTCAGCTTAGTTAATACTGTGCAACATCGGCTGAATAAAAGAAGGTTCCAAGCAACCTACACAGAGAGGGTAATCTGATGAATGAATTTGACCTGTGCACATACTGGTAACCTATTGTGCCTTGACAGTTTCCAGGGGCAACATCATAGAAAACCCAAGATTATCTTTATCGTTTAGATAGCATGTAGACTTTCCATAGTCACTACGTTGATGATTATAGCACCTGTCAGAATTTAGTTATGATTTTGGCTTATGATTAAGACACTTTAGCATCTTTTATCTATGTTTACGTTGTGCATTCCATTAGTTGTTCTTATTTTACACAGCTTTCTACCATGACATAATTACTAGCAGCCTCTTCTGGAAACAGGTCACTTCTTAGCTGTTCTCAAATGCATTGTATCTTTCCCCAGACTGTCCTGATGCTGTCCTTCTACCTGTGACAGAGTCAGGGAGCCAGTCTGTCCCTGGACAGATACTGTGGGAGAAACTTGAGTCAGTTATACTTGAGCCTGGACTTGGTGGGGCTCATCCTATCCCTGGAACCAGGTTTTCATTGAGCTAAAAGCCAGACAGAAAATACCTTCTTGGAGGACCAGAAGGACTAGGTTGCATTTTGGTGTGAGAAATGACATCGGTCATTCCAGTACCCTCTGGCCCTCATTTACTTGGTTTTAAAAGCTGACCCACAGTTGCATGATACCAGAGGCAGGCCAGTGTCCTGAAATTTCAAACCTTTTCATTCTATCTATTCAGACCATTCAAAGAGTGGCCCTTCCCAAGCTCCAGGTTTGGAGGCCGCACGACAACATTTTCTCAGCAGTATTGCTTAGCTTGGGTGAGCTGTTGCATAAAAATCAGGCCAAATGGAGTCACACTGGGCAGTAGCAGTCTTTGCACTGTTTGCACACAACTGAAAGTTTGTGTATTTTACTGCCGACCCAGGTATGAAATCATTGTGAGAAACTAACAGTACACTAGTGTGTCTCAAATCACTTATGCTCATGCTAGTGAAACTGATGTCAAGAGCTCTTTGTGAAGGATTAAAAGTTTCTAAATTTTTTTCCTATCACATAGTAAATAATAAGAATTTAACATGCATGCCTTCTGTGGATACATAATTTGAAGATTAAACTATGCCACTTGGAGTGTGTGTTTAATACCTCCTCAATAATTTTCAGAATTTTGTGGATCCAAGATTTTTTTCCTTTGTCCTTTGGTCTTGTGTATCGTTGTTTCTGAGTGGGCGTTGCCTATCATCACATGGTATGCTCACCCTATATATTTTGTTCTATTTTTAAAATACCTTGATTGAACACTTGAGGAGAGTGTAAGATAAAAATACCTATAATCTTTGCTTCTGTGAAATTTCCCTTCATGGATAACTACGGCTCTGCCATTGTCATGCCCTGTTCATTGTCTCTCTCCACTCAGTGTTCAATGGTTATTTAATCTGATAAATTAATTAGTTTTAGAAGCAGGTGATTTTATTGCCAGGACTAGTGTCCTCGTCTGCCATTAATACCAGCACTTGAATCGTGGTAGCAGGTAGATCTCTGAGTTCAAGCTCAGCCTCATATATGTACCAATTTCCAGTACAGGCAGTTCTACAAAGAAACCCTGTCTCAAAAAAATCTGAGACCACCCAAACAATATAACTAATAGATAATTGAGATATCTATTTATTGACACATACGTCGCTCCAGCAAAATTTCCGTTACTCATGGGTGAGCTTGATATTTATTATTCTGCCTTGATATCTCTCAAGTATATATTTTCCATTCATCAGTATAAATCATAAAATACTGTCCCAAATCCTTAGGCTATATAATTTAATCTTGATGTGGACAGTGTACTTGTTATGCAACATATCTTTTGTACCTTCCAAAATAAATCTTTTTACTTAGGATAAAAGTGTGTTCATCCAATCTCACACAACCATAATTAACTTTTTCTTTGTTTAGGCTTGGCTACTTTATAATTTCATGATGTGTGGCCTCATAATATCTATATGGCTTGAAAGGCTTACTTCTGGTAGTAAAATGACCTTACAACTTATTTAGACATTTACCTTTGAATAATATGGGATTGTTTCTATGTTCTGTTTGATTGTGCTCTTTCTCCAGTAAAAATACACATTGTTTCCACCTACTGTATTTGTGAATTTTCCTCAGTGCCACAGGCATTGAAACATACTGTGGATTTTTATTTATGGTTTAATATATATATGAGTTAATGTCTTCATTCTTAAAAATGAGCCTTATAATTAAAAAGAATATCGCTTAACTTTTGTTCGTATCTCATCTTTTGCTCAACAG
Seq C2 exon
GAATAATACCCAATGATCCTAACAATTGCAGCAAACTGACTAATTGTAAATCACTCCTTATTACACAAAGAAGAAATCATATAGGGGAGAAACCCTACAAGTGTGGAGAATGTGGTAAGGCCCTTAGTTCTCATAAAACACTTTCTATACATCAGAGACTTCACACTGGAGACAAACCTTACAAGTGTGAAGAGTGTCATAAGGCCTTCAGTACTCGCTCATCACTTTTTATACACATGAAAAATCATACTGATGAAAAAATCTACAAGTGTGAAGACTGTGGCAGAACATTTTACTATCTTTCAATGCTGAAGCAACATCAGAGAATTCATTCTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGGAAAAGCTTTAGCTTTCCCTCGTTCCTTAAGCAACATCAAAGACTTCATTGTAGAAAAAATGCCTTCAAGCATGAACAATGTGTCAACAGATTTCCCCCTCCTCTACCCCTTCAGGAACATGAGCAAATCCGTACTGAAGAGAAACCCTACAAGTGTGGAGAATGTTATAAAACCTTTCGTTATCACTCAGCCCTTAGGATACACAAGGCAGTTCATACTGGAGAGAGACCTTACAAGTGTGAAGAGTGTGGCAAATGTTTTTCCTCATCTTCCTGCCTTAAAAAACATCAAATACTTCACTCTGAAGACAACCCCTACAAGTGTGAAGAATGTTATAAAGCCTTTCGTAATCACTCAGCCCTTAGGATTCACAAGACAGTTCATACGGGAGAGAGACCTTACAAATGTCAGGAGTGTGGCAAATGCTATTCCTCACCTTCCTGCCTTAAAAGACATCAAATACTTCACTCTAAATACAACCCCTACAAGTGTGAAGAGTGTGGCAAATGTCTTTCCTCATCTTCCTGCCTTAAAACACATCAAACCCTTCACTCTGAAGACAAACCCTACAAGTGTGAAGACTGCTCCAGATGTTTCTGCTCATCTTCATCTCTTAGGCGACATCAAAAATTCCATTCTGAAGGCAATCCCTATAAGTGTGAAAAATGTGACAAAAGATTTTCATGTTCTGCAGGTCTTCAGGACCATCAAACAATTCATACTGGGGAGAAACCATATAGGTGTGAAAATTGTCACAAAGCCTTTTGTTATCGCTCATCCCTTAGGAAACATAAGACAGTTCATACCAGAGAGAAATCCACACACATGTGACAAGTGTCCTAGGGGCTTTTCCTCATCCTCCTGCCTTGTACAACATCAAGCTCTTCACTCTGAAGACAATCCACACAAGTGTGTAGAATGTAGGCAAAGCCTTTGTTAATGTTTATAGCCAGATTCGACCCATGACAGTTCATGCTGGAGAGAAATCCTATAAAGATCTCTTAGCATTATCAATTGGTTCTGAAATTATTGTATGGTCATCTGGTAAATTTAGAATTTATTAATACATAAATCTGATTGGTTTTTTTATAAGCTTCTAGAGTCTTGTTCCTACCAGGCAAATGGATGTTGTTATGGCTGACCATAGAGTGGATAGTCATGTGGTGGTGGTGGTGGGGATGGAGGCAGGGGCTAGCCAGAGAGTTGCCAGTGGCAGGAGAGTGGGATGCCTATTCTTCCAGTCCTTGACAGAGAGTTGGCAGGCAGAGAGCACCTGGAGCACAGAGAGTTGGCAGTTTCTTTTTTAATATTTTTCTCAACAGTCTTTAAAAGTTTATACTTCTTCAGTCCTTAAAAGACATCAACTAATTCATACTGAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058900-Rsl1:NM_001013769:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF0009621=zf-C2H2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: