MmuINT0138657 @ mm10
Intron Retention
Gene
ENSMUSG00000047181 | Samd14
Description
sterile alpha motif domain containing 14 [Source:MGI Symbol;Acc:MGI:2384945]
Coordinates
chr11:95023460-95026087:+
Coord C1 exon
chr11:95023460-95023615
Coord A exon
chr11:95023616-95024577
Coord C2 exon
chr11:95024578-95026087
Length
962 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CATTCTGGATTTCTTCCCAGAGC
3' ss Score
6.88
Exon sequences
Seq C1 exon
TTCCTGGATGAGTCCCTCCCTGCCGTACAACACTGGACCAGCCAGCAGGTGGGCCAGTGGCTACACAGCCTCAACCTGGAGCAGTATGCTGCCGAGTTTGCTGCCCGGCAGGTGGATGGGCCGCAGCTCCTGCAGCTGGACGGAAGCAAACTGAAG
Seq A exon
GTGGGTCAGAGTGCAGAGGTGATGATCTTTCAGATTGAGATAGCTTTTAGGGACAGAAATCACCCTTTGTCCTGACTTTTGACCCTGACTTACCTCCTGGACTGACCTGGCATTGGCTCTCCCTGTGTAGCCTCTGACCCGGTGTCTGACCTCTATGCAAGGTACTCCTTTCGCAGTGTAGTACAACACCTCCATCTGACTTGAAACTCAAGCCTAATCGCTTCTATCTGACCTTCTAGCTCCAGCCCGGGTCTTTGGGCTGACCTTGATCTTTGGACTACCATCAAGGCCACTTTCTTGGCCAGCTCCATCCCATATTCATTCTCAGATCCTGGATACCACCAGGCTCTGGCGTGCTAAGTGGACAGTGTGGAGAGGTGGCCTCCAATATCTGCAGGTTCCTGGGACTGAGGGAGAGAGAGCCCCATAGGAACTCTCTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATTTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGTTGGGATTTGAACTCAGGGCGTTTGGAAGAACAGTCGGCGCTCTTAACGGCTGAGCCATCTCACCAGCCCCCCATAGGAACTCTTGAAACGGGAAGGGACCTAGCCGATAAGCCACTTGACCTTGAACAAGTCACTCTTCACTCTGAGGACCTCAGAGGTTGAGCAGGATCATACTAAGGCTGAAATCCTAGGTTAAGGATCTGGCGCCAAGGACGGGGTCGCAAATGGCCTAGTGCCAGAGAGTTGTCATCTCTGACCACTTGCAAGCCATTCCTCCTACCTTGGGACCCCGATCCCTAGGCAAAGGCCAGACTTCCGAGCAGACTCTAGTGGGTCTGTGGGGCAGCGTTCTAGGCCTCTTTCCTTCATTCTGGATTTCTTCCCAG
Seq C2 exon
AGCCTGGGGCTCAGCAATTCGCATGACCGAGCACTGGTGAAGCGGAAGTTGAAGGAGCTGGCAGCGGCTGCTGAGAAGGAACGGAAGGCGCAGGAGAAGACCGCAAAGCAGCGGGAGAAGCTGCGGCGCCGCGAGAACGATGCCAAGAAGAGCTAGGGATGGCTGGCGGGGCTGGCACCCCGGCGCACTTGCAGCCACCTACATGGGCCTCACCAGGGAGGCAGGGTCCAGGCACCAGGCTCTCGGAGCACGCGGCCCCCCTCTCACCCTGTTTGGACTGAGTCCTCTGGAGGGAGACCCCAGGGGGGAGGGCCCAGTAATAAACCCAATTTCGAGGACTTGTTTGGCGCAGACTTCCAGGGGGAAGCAGGTGGCAGATGAAGAGGGCAGAGGCCAGGAATGCAGCAAACGCGGAGCCCAGAGGAGCCTGGTTCAGGTGGAACCTCCGCCCTCTGACTAGAGTGGTCCGAGCAGGAAGAAATCTAGCAGGAGAGGCCCTACCATGGCCAGGATTCCTAGGTTTAGAGAGTAGCCTGGGCAACCCGACTGGAGACAGGAGACAGCTGTGTCTCCTCACCTTTTGAAGGTGGCTGTGTGGTGGGAGAACAGATCTCCCCAGAGAGGCCAGTGGGCAGTGCCAGTAGCACTCAGGGTGGATTCCCAGACACCTCCTCAGAGGAGAGAGAGAGCAGGGCAGGATAAGCTGGCCTCTGTAAGGAAGGCAGAGGGGGAGAAGGGAGCTCTCACTCACTCTCTCTCTCTTCCCCTCCCTCACCTGCAGGTTCCAGCACACAGGTCTGCTCCTCTCCCATTGAGTCCCTTTCGCAGAGCTAAAATCCACTTCTTCGGAGAGTACTTGAGCCTTCGAGGGCAGGAAAAATTGAGAGCTGTTGGGGACACGGGTCACTCCCCCAACTAGTGTCTAGATGGTGAAGAGGCACACCCTAAGTGTGGCCTGCATGCTGCCAGATTGAAAGGGTCCATCAGCTTCCCTGGTGCCCTGGGTGTGTCAAGGCCTCAGAGGCCTGGGGCGGATGGACAGACACTGCTGGCTTAGGTTTGCTAGGCTACAGAGGGGGACTGGGCCAGCCCCGCGTGGGACTGGCACATGTCCTTTGTAGGGCGTGTTCAGAGATAGAGGGTCCAGGTGCAATGCTGACCCAGCTTCTTGGGTGCTGGTCAGTTACTACTAGGCCCAGGTTTTAGATGACAAACCCCCACCCCTCCCAGTTTCCTGGAGAGGTGAACAGGACCTGCATGTTAACTCCCTCTCTCCTGCCTGGGAAAGTGGCTGAAGGCCAGGGCCCTATGTTTGTGCTCAGTCACCTTCACTGGAAGAGGGGGCCTCATAGGGAAAACTAAGGTATCGGGGCACTGGCACTTCCTAGACTGGGTGGGGAGGGTGGAGGCTCTACTGTCCCCGAAGCCGTGAAGAGCCAAGTGTGCCCACCTGCATGTGAAGGGGGAAGATGGCTATCAACTTCTTTCAATAAATACTTACCACACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047181:ENSMUST00000055947:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=NA C2=0.843
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(66.2=82.7)
A:
NA
C2:
PF0764712=SAM_2=PD(30.8=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGCTGCCGAGTTTGCTG
R:
AGTCCAAACAGGGTGAGAGGG
Band lengths:
353-1315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types