RnoINT0130540 @ rn6
Intron Retention
Gene
ENSRNOG00000004155 | Samd14
Description
sterile alpha motif domain containing 14 [Source:RGD Symbol;Acc:1306138]
Coordinates
chr10:82833112-82833773:+
Coord C1 exon
chr10:82833112-82833267
Coord A exon
chr10:82833268-82833699
Coord C2 exon
chr10:82833700-82833773
Length
432 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CATTCTGGTTTTCTTCCCAGAGC
3' ss Score
9.07
Exon sequences
Seq C1 exon
TTTCTGGATGAGTCCCTCCCTGCTGTAGAACACTGGACCAGCCAGCAGGTGGGTCAGTGGCTGCACAGCCTCAACCTGGAACAGTATGCCGCTGAGTTTGCTGCCCGGCAGGTGGATGGGCCGCAGCTCCTGCAGCTGGATGGAAGCAAACTGAAG
Seq A exon
GTGGGTCAGAGTGCAGAGTTGATGGTTGGCCAATCTGAGATAGCCTTGAAGGATAGGGACTGCCCTTCTGACCCTGATTTACCTCCTGGACTGACCTGGGATTTCCTCTCCCTGTCTAGCCTCTGATCCCATATTCATTCTCAGAGCCTGGTTACCACCTTGTGTGACCTTGAACAAGTCACTCTCCATTCCGAGGACCTCAGAGGTTGGGCGGGGTCGGGCTAAGGCTGAAATCCTAGATTGAGGATCTGAAGCCAAGGATGGGGTCCCAAATGGCCTTGTGCCAGGAGTTGTCATCTCTGACCACTCGCATGCCATTCCTCTTAGCATAGGGCCCAATCCCTAGGCGAAGGCCATACAATAGAGCAGACTCCAGCGGGTCTGCAGGGCAGTGTTCTGGGCCTCTTTCCTTCATTCTGGTTTTCTTCCCAG
Seq C2 exon
AGCCTGGGGCTTAGCAATTCGCATGACCGGGCACTGGTGAAGCGGAAGTTGAAGGAGCTGGCAGCGGCTGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004155:ENSRNOT00000005519:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF0764712=SAM_2=PU(66.2=82.7)
A:
NA
C2:
PF0764712=SAM_2=PD(30.8=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGGATGAGTCCCTCCCT
R:
CGCTGCCAGCTCCTTCAAC
Band lengths:
222-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]