MmuINT0139009 @ mm9
Intron Retention
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89124575-89124935:-
Coord C1 exon
chr15:89124834-89124935
Coord A exon
chr15:89124761-89124833
Coord C2 exon
chr15:89124575-89124760
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
ACATCTGCTGGTGTTGGCAGGTG
3' ss Score
7.36
Exon sequences
Seq C1 exon
ATCCACAAGCTGCTGCAGATATCGGTGCTGGTAGTGGAGCTGCTCGACTCTGGCTCCTCTGTCCTGGTGAGCCTGGAGGACGGCTGGGACATCACCACTCAG
Seq A exon
GTGTGTGCAGGTGCGGGGAAGCGGGGAGGGCAGGGTCCTCCAATGTCCTCCTGACATCTGCTGGTGTTGGCAG
Seq C2 exon
GTGGTATCCTTGGTGCAGCTGCTCTCAGACCCCTTCTACCGCACTCTGGAAGGCTTCCGACTGCTAGTGGAAAAAGAGTGGCTGTCCTTTGGCCATCGTTTCAGCCACCGCGGGGCCCACACCCTAGCTGGGCAGAGCAGTGGCTTCACACCCGTCTTCCTGCAGTTCCTGGACTGTGTACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529-Sbf1:NM_001081030:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(7.6=100)
A:
NA
C2:
PF066029=Myotub-related=PU(54.3=98.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCTGCTGCAGATATCGG
R:
CACTAGCAGTCGGAAGCCTTC
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: