DreINT0130945 @ danRer10
Intron Retention
Gene
ENSDARG00000062968 | sbf1
Description
SET binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-040718-139]
Coordinates
chr4:9987582-9987954:+
Coord C1 exon
chr4:9987582-9987683
Coord A exon
chr4:9987684-9987768
Coord C2 exon
chr4:9987769-9987954
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TAATATTGTGCTGGGTGTAGGTG
3' ss Score
5.7
Exon sequences
Seq C1 exon
CTTCACAGGGTTTTACAGGTGTCTGTTCTTGTTGTGGAGCTTCTTGACAATGGTTCCTCGGTCATGGTTAGTTTGGAGGACGGCTGGGATGTAACAACACAG
Seq A exon
GTATGACACGCTCATTTAAATATGCATGAGCTGCCTCTACAGTTGAATTCTGGCCATATATGCATTAATATTGTGCTGGGTGTAG
Seq C2 exon
GTGGTGTCCCTTGTGCAGCTGCTGTCAGATCCGTACTACCGAACCATTGATGGCTTCCGGCTGCTCGTAGAGAAAGAGTGGCTGTCGTTCGGCCATCGATTCAGCCATCGTGGTGCTCAAACGCTCGCCAGTCAGAGCAGCGGATTCACACCAGTCTTCCTCCAGTTTCTGGACTGTGTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062968:ENSDART00000109452:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(7.7=100)
A:
NA
C2:
PF066029=Myotub-related=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCTGGGATGTAACAACAC
R:
GGAAGACTGGTGTGAATCCGC
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]