MmuINT0139024 @ mm9
Intron Retention
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89126383-89130051:-
Coord C1 exon
chr15:89129914-89130051
Coord A exon
chr15:89126461-89129913
Coord C2 exon
chr15:89126383-89126460
Length
3453 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TCTCTCTGCTGTGCCCTCAGTGC
3' ss Score
9.47
Exon sequences
Seq C1 exon
GCCAGGCCCAGGCCGACTCCAGCAGCCTGGAGCAAGAGAAGTACCTGCAGGCTGTGGTCAGCTCCATGCCACGTTATGCTGACTCATCAGGACGAAACACACTGAGTAGCTTCTCCTCAGCCCACATGGGTGGCCATG
Seq A exon
GTGAGAGGGGCTCCTGAGTAATGGTGGCCACAGAGCAAAGAGTACTTTGTGGGGCTGTGGCAGAATTTATGCTGGGCTGACCAGCAGGGGCAGAAGTGGCTTGACTGTGGTGTTGGGTATGGGACAAAGAGAGGGACTCCTCTCCCGAGTTCTGGGACAGGGCAGGAACACTGCTCAGACCAGGTGAGTGTCCTGAGGCCCTCACTCCTTTGACCATAAACCTGACCATTTCCTCGCCTTCCGTAAACCAGCACATCTGCCAGAGGCCTCTCAGTCCAGCAGATGGATGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTTTATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGCCCAACAGATGGGTGCTCTGTCCATCCCTCTAGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTCGGTCCAGCAGATGGGTGCTCTGTCCATCCCTCTAGTCCAACAGATGGGTGCTCTGTCCATCCCTTGCTGTGTTTGCTGATGGAACATCCTTAAACTCATTTTCTCATCTTTTCTCTAGCCTGTCTACTTCCAGCTGCCACTCTGCCCATTAGTGGGCCTTCATACTCTTCTGTCCTGGCTTTGGGTTTGTCTGCACTGTTCTTGCTGCCCTTGTCATTCCCTGTGCATACCTCCATTGCACCTGAAATCACTAAGAGGCGCCAGGCCAACCTTCCCATGCTGACTTCTGCCTGTGAGGTGTGCGCGGACACAGTTCTCTGCCTGAGAACTGCTATTATCATAATTGTGTGCAGTGTCTTCTGTCCTTATGCATTGGGTCTGTTGTCTGAGGAGGCCCAGAGATGAGGTATCTGCCTCTGGCTGTGAGTTTAGCCCTTCTTTTGCTGCCTGGCATTTGCTTCCCCAATCTAGCCGTGGGCTGGACTGTTAATAGTTGGTCTAGATGACAGTGCTAAAAGAGGGGCATCCTGGGTACGCTCTGGACACTCTCTGTGAAGGCAAATAGCCTGGTTAGCAAATGAAGTGTGAGTTATGGGCACTGCTCTGGCCTCCTTCTCCCGGCTTGACTGCTAGATGCTGGGATCTCTGGCTGATTCTTTGGCTTACAACTCTAGCCACTGACTTGCATACCAAGCCCTGTGCTTGGAAATCTGTCTCAGCATTTGGTGTGGCATCTGCCATAGACTGCAGAGCCCATTTTTACCAAGCTGGTGTCACACTGTCACTTGGGAGTAAGTTGCCCCAGTCCATCTTGTGTGCTCAAAACCTCTGGTTCCCCCATTCCCCTCTTGAAGTTGTAGGGCTACATTTTCTCTTCTGGTCTTGGATCCTGAAAGTATAATGGCACTGGTGGCTTTTAGGCTGGTGGTAGTTCCCACGAGAGCAGCCATCTTGTAGGCCAGGGTTCTTAAGTCTGTCTGTCTTGTTCCTATGGTTGATTGTTCTTTCTTATAGTTTTTTCAAGATACGGTTTCTCCCTGTAGCCCTGGCTGTTCTGTAAATTGCTTTATAGATCAGGCTGGCCTCAAACTCATAGAGGTTCATCTGCCTCTGCCTCCTGAGTGCTGTGATTAAAGGCATACGCCACCACACCAAGCCAGATATGTTCTTTTTTGTTTGTTTGTTTGTTTTTTGTTTGGTTTGTTTGTTTGTTTACAGGGTTTCTCTGTATAGTCTTGGCTGTCCTGGAACTTACTCTGTAGGCCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTACCACCACTGCCCAGTGCCAGATCTGTTCTTGCTAGTAGCTTTCTGCCCTTCCTTTTTTCTGTACCTACTTACTCTACCCCAGGCTTCTTCACTCCCTGTTGAACTTGTAGTTCTCATTTGTATTTACCAGTGCTTATCAGTGATCTTCATCTCTTGTTAACACTTGCTGGCCACTGGTGCTGAGGACAGGCAGCAAGTCTGCTCTCATGATCACCAAGTGATACTAGTCTGATGGATAGGCCAGGCTGACCAATTGCCATTTTTCCCTGAGAGTACCTGCTTTTTGTGTGATTAAATGTATTTTATAGTCTGATTTTTCTGCCAGAAATTCTGAGTGGCACCCTCAGGCAGCAGCCTCCCCTCCGAGTGTGTGTGCTTTCACCTTCCCTAATGTCTTCTGGACAGATCTGTAAACCTTCTCCAGTGCAAATGTTGCTACCTCTGGTGTTATAAATTCAGGGTGTAGGGCCACCCTCCCTGACTGTCCAGTGATGATCTGGAGTCTGGCTTCCTTCAGCTCTACTTGGATTTCCAGCTGCAGCCTAAATAGGCGGATACTGTCTGCACTCCAAGTTGGCTAACTGCCATCTGTAATGTGGGGTTGTCAGAGAAGTCAGGGTGTGGAAGACTGGCCTTGAGCTTGGCCATAGCTGGGTGGGGTGATGTTTTGCACCATGCCTTTTTCTGTGTCCTGTATGAGGGAGGCCTCTGCACAGTCAGGTAAACTTGAGGTGTGTGTGACTCAGGCTTCTCCCAGATACATTGTCCCAGCCCATAACTCTGCCTGGTGCAGTCCTAGGACTCAGATCTGCTCATGTCCTCGATTGAACTGTCACCCCACTCCTCCCTCCAGCTCTTCTTTCTCCCTCTTCCAGTTGCCTCTAGGTCTCCTCCAAGACTGAGGCTCTCAGGTACCTGTGCTTTGTTGTGGACAAGGCTACTACATGGTTGTGTGTTGAATATTCTTGGAATTGTCCAGCAGTCAGACCCTAGCTTACTATAAAGGAGGTCTAAGAGAAACTTGAAGACAAGATTTCTCTGAGATGTTTGAAGAAGAGCCCCACTATTCCAAAGTCTGACCTTTCCCAGTATCATAGAACCTCTATACCTAGTTACCCCTGGTGGAGAGGACCCATACCTGGACCAGACAAGGGCCCATCCTGTTTCTGACCCCTGGGAGTGGGGCTTGGTGGGAACCTTTGACAATCCAGGCCTGGAACCAAATCTGAGCCTTCTCTCTGCTGTGCCCTCAG
Seq C2 exon
TGCCCAGCCCCCGAGCCAGGGTCACCACGCTGTCCAACCCTTTGGCGGCCTCGGCCTCCAGATGGACTGCGTCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529-Sbf1:NM_001170561:28
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.376 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.6=100)
A:
NA
C2:
PF066029=Myotub-related=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: