HsaINT0145149 @ hg19
Intron Retention
Gene
ENSG00000100241 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:10542]
Coordinates
chr22:50895463-50897821:-
Coord C1 exon
chr22:50897684-50897821
Coord A exon
chr22:50895541-50897683
Coord C2 exon
chr22:50895463-50895540
Length
2143 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TCTCTCTGCTGTGCCCTCAGTTC
3' ss Score
9.19
Exon sequences
Seq C1 exon
GCCAGTCCCAGGCGGACTCGAGTAGCCTGGAGCAGGAGAAGTACCTGCAGGCTGTGGTCAGCTCCATGCCCCGCTACGCCGACGCGTCGGGACGCAACACGCTTAGCGGCTTCTCCTCAGCCCACATGGGCAGTCACG
Seq A exon
GTGAGGGTGCTTGTGGGCAGACGGTGGGGCAGGGGCACTTTGGGGGGCCGTGGTGGCATTTATGGTTTGGCAGGCAGGCCAGGGAGGAGCAGAAACGGCGCTGGTCATGGATGTTTGGGTGTGGGATGAGGAGCATGCCCTCCGGGTGCCGTGGGGCAGGGGCGGGAAGCCTGTCCAGACCAAGTGTGTGCCCAGACCAGGTGTGTGCCCTGACCTCCTGCCCGCCCTGACGTCCTGCCCGCTCTCCACCTCTGCGTCTGCTGCAGCTTCCTGTAGGGTCCTCCGGGTGCTGCCTCTACGCGGCTCTGTCTTACCATTTCCCACAGCCTGGAAACATCCCAGATGCTCCTCTGTCCTGTTCCCTCCCAGTGTCACTGTTTTTCCTCATCCCCCACACTCCACCCTCCCTGCATCCCCCAATCCAGACTGTCTTTGGAGCCTCTGGCCTGGCTCTGCCTGCAGCTTGGCCTCTGTCCTCGTGTGTCCTGGTTCCTTGGGCCTTGCCCGAGCTGGCCTTGCTGTCTCTGTCCCCACCGCCACGCACACTTCACAGGCGCCCTGCACACACTGAGCTAGACTGGCCCCAGGACGGGGTGGCAGATAGGCCCCACACTCACTCCTGTGTCCGGACCACCTGTTCTCTAGTTCAGAAGTGGTTTTGTTTTTCCAGATACCACATTATATACTTACATTTTACAATCGCCCTGTCTTGCTGCCTTCCCACCCCTGCCAGAAACCCTGAGTGGCATTTGCAGGTGGGGCCGCCCCTGCACCCCCCATGCCTGTGCTTCCCACAGAGTCCCTTTTGCGTCTCCGACCATCCCCAGTGCCAGTGGCTGCTGCCTCCCCGTGTCCCCCTCAGTGCCCAGCAATGCTCAGGGGCTCAAGCTTCACTCAGCTGTAGTCGTGGCTTCTAGTCCCAGCCCTGACCTTTTTTTTTTTTTTTTTTTGAGTCGGAGTCTTTCTCTGTCACCCACGCTGGAGTGCGGTGGTGCGATCTCGGCTCACTGCAAGCTCCACCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCCGCCACCGCGCCCGGCTGATTTTTTTGTATTGTATTTTTAGTAGAGACAGGGTTTTACCGTGTTAGCCAGGATGATCTCGATCTCCTGACCTGGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGGCCAGCTCTGACCTTTTTACAAGGATACACTGGGCCCTGGTTGGCGTCCAAAGCAGGCTGGTGCTGCGTCCTCACTGTGAGCTGGGCGCCTGCAGTGTGGCAGCCGTCAGAGGACACAGGGCGTGTTGGGCTGGCATTGTGCTTGGCCTGTAGTGACCACTTGGTGGACGAGGGGACATTGCCTCTCTCAGTCCCACCCTCGGGCCTTGCAGAAGCAGGTGAGCCTGGGCAGGGCCAGGCGCCCAGAGACCCTCTGTGGACCCCAGGCATCTCCCAGCCCTTTGGGCTGCCAGTCCTCCCTGTGCCTTCAGGCCACGTCGTCTGGACCGTAAACCTCAGCCTGGGACTCAGATCTGCCTGTGTCCTGGACTGAGCTGCTCTCCGTCCTTTTGGACTGGGCTCAGGCTCTGAGCCCACCCTCTCCCCTCTTCGGGAAGCCTCCAGGTCGCCTCTTCTCCAGGCCACACCTCTTGGGCACCTCCTGTTGCTGTGCCCTGGACAGAGGCGTCTACATGCTCATGTGTGGAGCGTTCTGAGCTGTGCCCATCACAAGCCCTGGCCCCCTGAGTGGAGGACAAAGGGCCAGGATGTGGAGGGAGGGACTCAGAGACAGACTTGCTCTAAGCTGGTTTGAGTGGGAAGAAAGGAAGTGTTAGAGGAGAGCCCGGGATCCCCACCGCATAGCCCTTCTGCTGCCACGGAGTGCTCTGCGGCCTGCCCTGCCCTGGCAGAGAGGCCCACACCAGGATGGCTCTTCCCACTTTCCTGCGATCAGGGACTTGGGGCTGACCCCTGCTGTCTCCAGGCTCCCTGGGGGCTTGGTGGAACCCTCTGACCTGTAGGCACCCCCAAGCTGGGCACGCCCAGGCCTGGGGCTAGGCCTGAGCCTTCTCTCTGCTGTGCCCTCAG
Seq C2 exon
TTCCCAGCCCCAGAGCCAGGGTCACCACGCTGTCCAACCCCATGGCGGCCTCGGCCTCCAGACGGACCGCACCCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100241-SBF1:NM_002972:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.6=100)
A:
NA
C2:
PF066029=Myotub-related=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)