MmuINT0139124 @ mm9
Intron Retention
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:79520998-79521292:-
Coord C1 exon
chr10:79521161-79521292
Coord A exon
chr10:79521075-79521160
Coord C2 exon
chr10:79520998-79521074
Length
86 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
3' ss Seq
CTAACTTACTGTGTCCCCAGGTC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTACGAGGCAGCAAAATGAGCTGCCTCCTGGCAGAACAGAATCGCGGCGAGTATTTCACCGTGTACAAGCCAAACATCGGCAGACAGAGCCAGCTGGAGACCCTGGACAGCCTGTGCCGGAAGTTTCACCGG
Seq A exon
GTAGGGAAGGCCCCACCCTCTCATGGCGTCTGGGGATGCACAGGGAGCTTCTGAGCCTCTTCCCTGCTAACTTACTGTGTCCCCAG
Seq C2 exon
GTCACTGTGGAAGAGGCCCGGGAACCCTGGGAGAGCAGCTATGCCCTGTCCTTGGAGCACTGCAGTCACACCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673-Sbno2:NM_183426:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAATGAGCTGCCTCCTG
R:
CTCCAAGGACAGGGCATAGCT
Band lengths:
180-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: