RnoINT0131009 @ rn6
Intron Retention
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12514135-12514432:+
Coord C1 exon
chr7:12514135-12514266
Coord A exon
chr7:12514267-12514355
Coord C2 exon
chr7:12514356-12514432
Length
89 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
3' ss Seq
GTGTAGATTTGCGTCCCCAGGTC
3' ss Score
8.2
Exon sequences
Seq C1 exon
GTACGAGGCAGCAAAACGAGCTGCCTTCTGGCAGAACAGAATCGAGGCGATTATTTCACCGTGTACAAGCCAAACATTGGCCGGCAGAGCCAGCTGGAGACCCTGGACAACCTGTGCCGGAAGTTCCACCGG
Seq A exon
GTAGGGAAGAGCCTACCCTCTCATGGCGGCTGGGAATGCATGGGGAACTGAGCCTCTTCCCCTACTAATGTGTAGATTTGCGTCCCCAG
Seq C2 exon
GTCACCCCGGAAGAGGCGCGGGAACCCTGGGAGAGCAGCTATGCGCTGTCGCTGGAGCACTGCAGCCACACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987:ENSRNOT00000068197:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAGAACAGAATCGAGGC
R:
CAGGTAGTGTGGCTGCAGTG
Band lengths:
182-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]