MmuINT0140033 @ mm9
Intron Retention
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:116990437-116996082:-
Coord C1 exon
chr7:116995948-116996082
Coord A exon
chr7:116990563-116995947
Coord C2 exon
chr7:116990437-116990562
Length
5385 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TACACACTACTGTCTTGCAGAAG
3' ss Score
7.27
Exon sequences
Seq C1 exon
ATATGGACGAATGCTTGGAGAACAATGGTGGCTGCCAGCACATCTGCACCAACGTTATTGGGAGCTATGAATGTCGCTGCAAAGAAGGTTTCTTTCTAAGTGACAATCAGCACACTTGCATTCACCGCTCAGAAG
Seq A exon
GTATCTTAGTCTGGCTGAGGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGGGCGGAGTCTCATCAGAGTTCCCACCCCTTCACATATGAGAAGACTTTATCCTGGAAGCAGAGTGTCTAGAAAGTCTTAGAAGATGGAGACAAGTCCACAATGTGCTGCTAGAGAGACTCGGCAAGCTCTGTTACCTTTCATGGTTGTCACCTAGCAACGTGGCAGGCAGGCTTCGGGATCTCTGCGGTCCCTGCAAACTTTCACACCCTCTGATCCTAATCTCTAAATAGAGAACATTTCAAACCTCAGTACATGGTTCCAGAGAAATAAGGTATGTGATTTGCCAAGTTTTTCAAAAAGATGCTGAAAACCGCAGTACCAGTGCAAGCAAGCCCTATGCCCTGGGCTGGGGATGCGGGCCGGGGCGGGAGCTGGATCCTCCCTCCCTATCGGACTAGCCTCCTTACAGTCTCAAGACACTTCTGGCCCTTCCCTGAGTTTTGCATTTCTTGGGCTCTGTGCTTCTAGGGTTCTGTGGGGGTTGTGGGCAGGAGAAAACACTCTCTCTGGACTCCCCCCCCCCACCCCCATGCTCTCTCCCACTCAGCCATTACCGCGCTTCTGAAGGCCTTCCTCTCATAATCTTTGCTTTGAGTTTGTCTTTTTTTGAGTTTATGTCTTTTATTTCTACTATTTTTAAATTTCTACAGCTTTGTGGGAGTCTTTGGAGGGAGGGGCATCAAGCACAAGTGGCCAATCGGTTGGTTTTTTTACCGAATGTCATCTTTTTATTTCTCTGCTTTTTCTTAAGCCAAATAGGCTTATCTTAGTGGCTGTGTCTCCTTGGTGTTGCCTCCTCCTGTCTTTAGATTTAAGAGCCCAAATATTAGACAGTTCACTCATCTTAGCATATGATGCGTATGATTCCCATATCTTAAGAGTGAAGTCACTTTAAGTTCTTCCATTATCAATCACAGACTTATAAATTTATTATTTGCCATGGCCTTAGTGGACATTTCAAGTGTTTCTTCATGGAAGATGATTTTACTTTTATTTTCCAAGAATGGTGGATTCAGCTACACTTGACAGAATGCCTTGGTGCTGGGGAGCAGTGTATTTGATAGCTGTTGTTCCCATCTGTTCACTCTCAATGCTCACCGGGGTGGGGGGAGTCACAAACACTGGTTCTGATTTCTTATCTCATGTTAGGTGTGACCCTTGAATAGTAGTGGTGGCTTTTTCTTCCTGCCGGGATCTCAAGATTCTGGTGGCATTGGATGAAGTTTCACATGATAGACCTAGAGAAGGGACTCATTAAGGAGTCAGGCAGAGGGTGACCTGACTCAGGGCTCTCTCCTGTCAGTCTGCTTCCAGGACGTCACTCTGGCTTTCTCCTCTGGTGGCTGTGGGGGGAGGAAGGACCTACTGGTAAAGCCATTGCCTCTGCACCCCCACGTAGGCTCTGCCCACCAGCAGCGGCCTGGGCTTCTGGTCTCTTACTTAGCCTGTGTTCCAGACCCCTGGCTCAGCTCTCCTCTCCCCTCCTACAGGTTTCTTAGAGCAGAGGTAAATACGAGTTCTTTCTGTGAGCTGTATTAGAATTCTAACTCTTCCACAATTCAGACATTCTTGGATCCCCTGATGGGTACTTAACGTGAATATAAATGTCTGGAACTAAAACCCAAATCCAAGAATTGTTATTGTGGTCTGGAAGTGCTGTGATCTTCTGTCGAATTTCAGTTTGACTACTAGGCAAATTCCAGCAGGTTACAGCAGTTTGCAATGGCAACCCACTTCCACCATAGAACTTGAATTCTTCAACCAAATGACTTCTACATTCCTAAGGACTTCTTCCTTCATGTGTACTGTAGCCTCTTGGAGATTGTATTCAAAGACTCTAAAATCCACCATGGAAAATGTGTGTGTGTGGGGGTGGGTGGGTGGGGGGGGAGCTGATGTCACAGGCTAGTATTTTCTATTGCTACTGTTTTGTTTTAATAATTATTTACTAAGTATTTTTCAACAAGGAGACCTAGCAGCTGAGTTGGATGGAACTCAAGCTACTGAATTTTTTTGTTAAAAACACTTAGAAAGCCTAGAGCTGTGATGAAAAGAATGTGTGTTTTCACCCGTGTAATGGAGGGGAAACCTCACCCTCCATCTGCCTTTGTTCCCATTCAGGGGTGTTCAGGCTGTCAGAACGAGCCTTTCTCTTTTGTCTTGTCTGCTCTGGGGTATTTAGACAGTGTACTGCTGCCCTGGCTGAGCTGCAGGCGACATCGGGTGACAAGGAGGACTGGGCTTGCAGCAGTGCTCATCTCCTGTCTTGTACAATATTTCCCATCCTTACTTTAAGTTTCCAGAGATATCCTAAAGTGGAAGCCTGGCAAGGGAGCAAAAGTGTGGGGGCATCTCCGGGGTTTCTGTGCATCTTCCTTTGGGTGAACCGTTAGCTTTGGACATGGCTACCAGACCAGCTCCTAGAGAAATTGGGCTCTAGCTGTCCTTCCTGGTCTGGACCAGACCCATCTGCCTCCTCTAGCTATGACCTTGTTTTGAATTAGGGTACTCTGAAGGGCTTTGGGGGTCACGTCTTGAAAAGCCATCTGCATTTTCAGAGTCGCCTCTGTCCTCATCACCTCTTGGCAACTTCAGATCCAGTTTGCTTTGAGGGGACATCAGGGGCAGCTTCTCTGATGACTTTTGGTTTTCTTATAAAATATTTCTTGTGTAAATGAACAGCTCAGGGCCAGCAAAAGTCACTTTGCAAATGCCTTAGGCACATAATCAGAGTAAACTCTCCAGAAGGTGAATGGGAGCTGTTTGGCAGGGGGAGGTAGACTTTCTATGAGTTCCTACACTGTGTCTCAAGCACTCTAACAATTACCTGCTAGTACCATCCTGTCTCAATTACTTCAAATGCTCCACGGACCCAAAGGCAAACACAGGACTTGCTGGGTCTTTTGCGGGAGGGAAGGGCAGCTCTCACCTCCTGTGCCTTTTCGGTACTGGGGTGTGAATGACATCTTCATAAAGGATCCACCAGAGCAGAGAGAGCTTTGCAGCAACCCAGTGCAAGCTTCTTTCTGTGCTACTTGACAGCAGCCCTTGGCAGGGGCTGACGAATCCCAGCAGCATGTAGCAGATTGTATGCGCAGGGGTGGGGGGGGGGGAACCACTCGAAGCTGTCAGATGAAAAACAAGGTGGTCTTTGACAGACCCAGAGAGTTAGAGGATGTTTTAACTGCTGTACCGTCTTTTGAAATAGAAATATCTTTTGAAGTAACTGTTCCCAGGACACACAGGCATCGAGAGGAGGGTCATCTTTTCATTGAAGTCTATTAGCTGTGGCTTTAGGGGTAGAATACAGAATGGTGTTCAGCCCTAGGAAAGCTGAATAAACCCTTCCAGTACTGGAGTTTAAAACAGTCCTAATTCTAGAGTTAGAAAGTCTCATAGGCCCGTTAACCTTTGAGAACCAAAGCTCCACTCTCAAGGATGTCTCAGAGTCACCTTACACAGATGCCGAGAGACAATATGTGCACACCTCCTCGCTAATGCATCCCTGACTGAGAAGACATCTTCAGTATATGCTTGAGTTGGATACCCAGGCTGCAAGGTTCCAACGAACTGGTTTCCCGATGAGGCAGGCTGCTGGCAGCCTACGCAGGTGCTGCTTCTGCTCTTGCACCAGCGCTTAGATCCGTGGTTCTCAACTCTTGGGTCGTGACCTCCTTCGACAAACCTCTATATCCAAAAATATTTACCTTGCTATTCATAACAGTAGCAACATTACAGTTATGAAGTAGCAACAAAAGTAATTTTATGGTTGAGGTTACCACACCATGAGGAACTGTATTGAAGGGTCACATGAGGAAGGTTGAGAACCATCGATTTAGATGCTTGCTTAAACCAGCAAGTATCACAGCTACCTGATGTGTCCCTCTTTCCTATCACCATTGTTAGGACTGATTGGGCCTAGTAGACTCTTACGGAACAGCTAACATCATTTCACGGCAGCTACAGGAACCCACATGCAGGAAGGCTTCGCCTCTTTCCTTTTATCCTTCTTGTGTTGTTGTATGATGCTGTCCGTGAGAGGCGTGATGCTCTGAGCATGCTCAGGGTTGGTCACTTGAGAGAAGCCTCAAGGCAGGTGCTGTGGTTCTTCATGGCTGAATGTAAATGCATGGCAGACATAAAGGCTCTGCTCTCTGGGGTGGAGGCACTGCTTTGTTGAGAGGGCTTCTTTATTTTTTAAAGATTATTTTATGTGTATGAGTGTTTTGCCTGCATGTATGTCTGTATATCATGTGTTTGCCTGGTGCCCGCAGAGGCCAGAAGATGATTCTGGATCCTCTGGAAATAAGGTTTATAGATGGTTGTGAGCCATCGTGTGGAAGCTGGAATCAAACCCAGGTCCTCTGGAAGAACAGCCAGTGCTCTTAACTGTTGAGCCACCTCTTTAGCTCCAGCTCCTCTTCTTTAAAAACATTCAAGGGATCCCATCTCTTAGGCAACAAAAGAAATCTTTTATATCTCCGTTAATTGCCCCAGCCTGATTATTTAATATTTTATTTATTTATTAGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCATGGCTATCTGGAACTCACTCTGCAGACCATCCTGGCTTCGAACTCAGAGATCTACCTACCTGTGCCTCCCGAGTGCTGGGATTAAAAGTATGTGTCACTACCACCCATCTTTTTATTTTTTATTTTCATTTTTTTGAGCCCCAGCCTGATTTTAATGCACATTCTTTTTATTTGTTTATTGTGCATATACACAGAAGAGGGCAACTTAGAGGAATTGTTTCTCTCCTACCATGAAGGTTTTGGTCATAAAACTCAATTGGCAAGGCTTGGCTTCCTTTACTCACTGTGCCATCTTACCAGTTAGATGTAGTCTTTAAAAATGTGCAGCTGAAGCAGGGTGGTGGTGGTACATGTCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATCTCTATAAGTTCAAGGCCAGCCCAGTCTACAGAGTGAGTTCCGGTACAGCCAAGGCTACACAGACAAACCCTGACTTGAAAAGCCAAAAAAGAAAAAAAATGTGGCTGGGGCCATAAGGGTGGCACATGCCTGTAATCCCAGCACACCTGGGAGGTAGAGGCAGGAGCATGACGAATTCTAGGTAAGTCTGAACTACAAAGGGAGTTGAAGGCCAGCCTGAGCTACAAAGCAAGACCCTGTCTCATAAAACAAAAATAAATAAACTATGGGGCCAATAGAGATCCAGACAGCAAGCCTACGGCCTTCCCCACTGTCCATCCTGTAGCTTTCCCCAGTCTGTCACCTGCTACACACTACTGTCTTGCAG
Seq C2 exon
AAGGCCTGAGCTGTATGAACAAGGATCATGGCTGTGGTCACATCTGCAAGGAGGCCCCAAGAGGCAGCGTTGCCTGTGAATGCAGGCCTGGTTTTGAACTGGCCAAAAACCAGAAAGACTGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279-Scube2:NM_020052:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: