GgaINT0057954 @ galGal4
Intron Retention
Gene
ENSGALG00000005892 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr5:8932547-8937310:+
Coord C1 exon
chr5:8932547-8932681
Coord A exon
chr5:8932682-8937184
Coord C2 exon
chr5:8937185-8937310
Length
4503 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TGCCTTTGTCTGTTTTGCAGAAG
3' ss Score
9.81
Exon sequences
Seq C1 exon
ATACAGATGAATGCATGTTCAACAACGGTGGCTGCCAGCACGTTTGTGTCAACACGGTGGGGAGCTATGAGTGTCGCTGTAAGGAAGGCTTCTTTCTCAGTGACAACCAGCACACGTGCATCCACCGCTCAGAAG
Seq A exon
GTACTGGCTGCCTCCCTCCAGGCACCAAGCAGGAGTTTCTGACAAAAGTTCCCTGCAAAGTCTCTACAGCAGCTTCAAAAGTACTTTGAGTTTGCGTTTTTCAAGGCTGAGGAGGGTCTCGGAGTCCTCATTCCTTTTAAAAGGAACAGTGTGTCAGGATCTTCTAAGGGACTTTGAAGGCGCTTCACATCCCTTCTGTCTCTTTGATCCCATCTGTCTGTCTGTCTGCTGTACCTCTTAGAGACAGTACTACTGTTCCCAGTGTACTTTGTGCTCTGTTGGATAGCTAACTACATCCTGGTACAGGGAATGGCAACACATTGAAGAACAGTCAGCTTTGGCCATTTTCACTTTGGTTCCAGGTTCACCTGCATCACCCCTAGGTACCTTTTAGATTCCCTGTATAGTGTTTAGTTTTCAGCTAGGAGATTTATAGTTTGTCAGCCCCAAAGGTATTCAAATCCTGTTCTTTGTTTTGAGTAAAACCTTTATGAAGCGACCTCTGAGAGATCAGAGAGCCTTGGATGTCTAATTAGATATCACGTTGAACAAAATTATTTTGGATGCCCTTGAGGAATACTTTAAAGTGGTTGCTCAGATCGGGGATTTGTCCATTGAACTGTATGGTGAATATCTTGCTCAGAAGTATTTAAGGCTGGAAAGCTTTCTTTAATCTAAGACTTATCGTTGGCATGACTATAAGAGGAATCCGAGCATGAATAAACAAATCTCACTTTAAAAATCCCCATACTGAGGAGATCAGCCTTTATAGACATATATGGCCATCCAGAGATGCGTGCATTGAGATGGCTGTCATCTGATGTAACTGAATTGATCTCTTGTCTGAATTTGTATTATCAGCTTTTCTGGTACCAGGCTTGGTCTCGTGGAGGTTGGCTGATACAGGGTGATTTCTCAGGCCATTGCTCAGAGCAGCAGGCTGCAGTGGCAGGGCAGGGCTTTTCCCTTCACGTTTCTGTGTTTGCTAGCAGTGGTGTATGTTTATGCGCATAGATGATGAATCCAAGAATGAAAATCAGTCGCTTCAACTCCTCACCTTGTCTGATGCCAAGAGAGGAGAAGCTTCCAACTCTTCTTATTTGCTACTTCTTGAGTATACTTTACTCCCTCTCTTGAGCTAACAGCAGTAGTATTTCCTGTCATTAATAATCATACCTTTGGAATTCTTGATACTGAAATACAGAAGTGGTGCTTTTGGTTTTTAAAACTAGTTTTTTTCAGGTCGTAGCCCTGTGACTGTTTACCCCCTGCCCCTTCCTGCACTGCTGTGAAGAAGCACTCCATGGAATTCCCCACTGTTTTTTCTCTTGGGTGGGCAGGTCTGCTGAAAGCCAAATCTCATTGCCGTATCTCTTCCCCTCACTTTGTTCTCTCCTTTTCCACTCATTGCTAAGTCTCTGCCTTGCGTTTTTATCTGTCAGTGCATATCCTTTATTAGTCCTCTCTTGAGACATCGCAGCATCGATCTAAACAGCATTTGCCACCTACTGCCTAGCCCACCTATTTAGTTCTGTTTCTTATCTGTAGTATAAGTCAGTATCTCCTTCCCCTGTCTCTCAGCTCAGTTAAAAGTGCACACTCTTCTTAGAGGTTTGCAATATTGGAAAACGAGTGAACTTGAGGCTGCTGTATTCCTTCTGAGGACCAGGGTAATTAGGAAGCCTCAGGCTTACTTGCCCTTCTGAGTTTATTTGTTCATATCTTCTGGTTTCCCTGACACCTGTTCCAGGACTGTGACACAGAACTCAAGGCCAGGTAGCTATCAGAGGACAGTTTGATAATTCATTTAAGTTGATTTTCACACATCATTTTGGCATGATTGTGTTGGTCTAGCGTGAGGGATGCTCTGAGGTTCATGATGCCTGGCCGCTGCTTAGACCACTTGAACTCTATGCCTTGAAGTTGTGCAAAATCATATTTTCCCCTGGGATGTCTGCTTTGAATGAGCTATTTCTCATTGGCATGTGAGAGAATGGATTTACACTGGGAGACAGTTGCTCTGGCTGGCAGGACAGCCGTACCATTGTAGCTTGTTGCTGTGTTTAACTTGCATGTTAGAGAATAGAATAAAGAAAGAAGAAGGAAAGTATAGAATTTTCACTAGGAAAAAAAGTTCATCTAGCAGCGGCTATTGATATTTATGACAAATTTTACCACTGGGTAACATCCCAAAGGCCATCAGAAAGGACTGCTCTTGCTCGTGGTCCTCTGGGCCCGGCAGGCTCTGGATTCTGTTCCCTTTATCTATGGGTATGGAAGTCCAATGACTCCTCTTTCCCCAGGGAACTTGTGTGTCAGCAGGGCAAGAACTGCTGCTCGAGAAGTTGTGTGCCTGGGAAGTACAAAGTGGGGGCTGGACCACTACGTGACATGAGAACGGATCTGGAACAGTGTGACCTGGAAGACTGTGCATCTGTGATGGAGTTTGCAGGCAAACAGTGCTTGGAGTTGTATGCTTCTATAATAGATCCTTGTAAAATGGGGCCAAATGGAAGATGTGCTTTTCTACCACCTTTGGAAATTTGCAGCAGATTCATAGTAAATGCTAGGAGGTGTGGGTGCATTTCTCTTCTATAAAATGCTCTCTTTCAGATCAGCTAGATTTTGGTGGATTTGGTCATGTACCTTGTTACACAGTGGGCGCCCTGGTATTAAAATGTGTGCTGGTTTGGAAAGTGCATTTCTAGCTTTCCATGGAGATCTGATTGAACTCTGCTAGCTTAGAAATGAGCAATCCCCAGTTCAGCATTTAAACCATTTGTCTGATATCAGTGAACCTCACTGAATTACCTGCTTGAGCAATTTCCCCCTTGGTAGCTCAGTTGAGACAAAACCAAAAAATTCCAAACCAAACGACAACTTTGCTAACAGAAATTAAGCTGCTAATTCTCTTAATGCTTTCTGACAACACTGAGCTAATGGACCAAATCATACTGCATGTTTAAGTACAGAGATGTCACAAAAACACAAGAGTTAATGAGGCTAATTTGTGGTCTCATGGATTGTCCCATTTCTTGAATGACAGCACTTAATGGATGGCAGCTTTCATGTGGGCTCCTTGGGCTGTGTTTGTGTGCTGCAGGATTTAAGTGTCATTGTCTTGTTAGACCTCTAAGGGTTCTCACTGTGGGAAAGGAATCAAAAAGCCAGTAGAGCAGAATAATCCAGGCTCTGCAACATCCATTCTATTGTTACTTAAAGCTTTCTTTACAGAGAAAGGGTGCTGTAGTTGGTTGCGTGCCGAGCAAGGACCTAAGTGAAGTGTAATGGGATGATGACAAGGAGCTGACCTCTGCTTGCCATTATAGTGGTTTTATTTTCATTTAGGAGTTTCCTTTTGCAGTTTTGTAGCAATAGAGAAGGCTTCAGCAGAACTGTGCTCCTAACTATCAGGGACAAAAATGATGTCGTGTTTTTATGAGGTGCACCAGGAAGAAGAAAGCCACTGGTGTCACCTTGCTTTTTCTTTGGGTTTTAGTAGATACTGGGCAGCAAATCGTGACCCACTGAGAGGTATGCAGAAATAGAAAATAGTGTGATAGTTCTCAGTGGGATTATTTAGAGAGGTTTTCTTGAAATAAAGAAAAAAATTGCCATACAGCATAGGTGGTTGCACAGCTGCCTGGTCACCATTTGGTCACTGCTTTGGGAGTCAGCTGTGTAGGCCAGTGATTGAAGTGGGAATGATGGAGGAGACTTGATAGCAACATTTCAGTATCTAAGGGGAGGCTGTAAGAAAGAAGGGGACAGACTCTTTAGCTGGGCCTGTTGTGACAGGACAAGGGGAAATGGTTTCAAACTAAAGAAGGGGAGATTTAAACTGGATATAAGAAAAAATAATTCTTACAGTAATGGTAGTGAGGCACTGGTACAGGTTGCCCAGAGAGGTGGTGGATGCCCCATCCCTGGAGGCATTCAAGCTCAGACTGGATGGGCTGCTGAGCACCTGACCTAGATATGGGTGTCCCTGCTTATTGCAGGGGAGTTGGACTAGATGGCCTTTAATGGTCCCTTCCAACTAAAACAATTCTATGATTTGTCTGACATCTTATGATGTTCCTGTGTTTGGTGAGCCTTCATTTTAATCAGAGAACTAAGAACTTTGCTTTAGGCTTTGAATATGCCATGTACCAGCTACCTTGTGTTTTTTGTTAAAGGTTTTATGAACACTGGGATAAAGTGTGAGTGTTGGATGAGAATGTAGATGCTGCACAAACCTAGGGCTGCTGCTTTTTGTCTTTGCAATCAAAGAACTTGGGCACAGGAAAGATCACTGCTGGAGAAGCCTTGGGGGCACTGGCTTTGTAGGATTGGACTTTCTGCCTTTCTAGTATGTAAGCTCATGCTTTTTGCCCTAATGCTGTGGAGCCTTCCTAGAAGTAGCGAATGATGGCTGTCTATATTGGGCTGATTTTATTTGCTTGTTGCCTGCACACAGAATTGCTGAGGGTGCTGACGCTCTTGCCTTTGTCTGTTTTGCAG
Seq C2 exon
AAGGCATGAGCTGCATGAATAAAGATCATGGCTGTGCACACATCTGCAGAGAAACGCCCAAAGGAGGGGTTGCTTGTGAATGCCGACCAGGATTTGAGCTGTCCAAGAACCAGAGAAGCTGCATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005892:ENSGALT00000009480:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=78.3)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]