MmuINT0147209 @ mm10
Intron Retention
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83277513-83280164:+
Coord C1 exon
chr6:83277513-83277571
Coord A exon
chr6:83277572-83279963
Coord C2 exon
chr6:83279964-83280164
Length
2392 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TTCTGTGCTTGGTCTCCAAGTAC
3' ss Score
3.36
Exon sequences
Seq C1 exon
TGAACACAACCACGGTCAATGCCTCAGCCCCACTGGCACCAAACACCAACACGTCTCTG
Seq A exon
GTAAGCCTCTTCCTTCCAGGGCAGACTGATCATGCGGTTTTGTTTATGGTGGGGAGTCAGGAAGGAGTTGGGAGGTGAGTCCCAGGAGCACATGGGTTCTGAGAACGATGTTTTTAGTTTGTAACCGAAAGCATCCTATTCTACAGCATCATCAGTGCGTGCCTTCTCTATGCAGAACGATAGCATGTGCATTCCCAGGGGAGGCCAGGAACAGAGGTACACACATATATGCACAGGTCTGCCTGGAAACCACCAGTTCCCATCCAACAGTGCACTTCCAGCACCCAAGGTTTATTAGACTCCCCCTGCTCAATGAATTTGATCAGCCTTTTGGCTTAATAGCCTCCAAGGACCTTAGCTGCCCTGCCTTCCTGAAAAATGGGAAGGAAGTGTGGGCTGTAGGCCTCTCCAGCCTAAGTAGATGGAAGGATGCAAAATTATAATCCAGGTAAAGGGGAGCATGTAGCCGTGGGGCAGCTTTGTAAGCCGTGAGTGACCTTAAGGTTGCTCAAGTTCCCTTGCACAGGCAACTAATGGCTCAGTTCATATCTACCTCAACTGACTATTAGCCAAAAATGTTCACACATAAGACTTTGAGAAGAGCAGACTGGGGCAGTGCCTACCTGCCAGTGCCTGTTTTTTTTTTTGTTTGTTTGTTTTTGTTTTTAGATTTATTTATTATTATATCTAAGTACATTGTAGCTGTCTTCAGATGCACCAGAAGAGAGAGTCAGATCTCATTATGAATGGTTGTGAGCCACCATGTAGTTGCTGGGATTTGAACTCAGGACCCTCAGAAGAGCAGTCGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGCCAGTGCCTGTTTTATGTAAGGGGCTATGTGCTGGGATCTGGGCTCCAATGGACCAGCTGGGATGCTTTGGTCTGTCTTTACATTGGCTTTTCAGTCCTTACCTTCACGTGATAAAGCACCCTGGCAAAGGAAAACCGTTTTAAGGGAGAAAGGGTTTATTCAGCTCCCAGTCCTAGGCTGCAGTTCATCACTGCAGAGAAGGCAAGGCGACAAGCACTTGAAGCAGTGAGTCGTGTGCACCCAGTCGGGAATGAATGCATGTATGCTCTACTGGCTAGCTGGCTGTCTCCACTCTTACACAGTCCAGGATGCACTGTCTAGGGAATGGTGCCACTTATGGTGGACTGGGTCTTCCCACATCAATGAACACAGTCAAGGCAATCCTCTACAGACATAGTCACACAGGTCAACCTCATGTATACAGTTCCTCCCAGGTGATTCTAGATTGAATCAACTTGGCAGTTTAAAGTAACCACCTATTGCTCCCACACACAACTAGCCCACTCTCAGAGGATTACTGCAAACATCTGTTTGCTTCACTAAGTAGCTATTTCTAAACATGAGCACACTAACTTTTAAAAGTATATATTTGGACTGGAGGGATGACTCAGCAATTAGGAGCACTGACTGGTTTTTCAAAGGACCAGAGCTCAGTTCCCAGGATTCATAGTAGGTGGCTCACAAGAGCTCCATGGGGACCTGGCGCCATCTTCTGGCCTTTTCAGGCACCCACATGCACAGTACAAACAATGTTACACGCATTGATACATAATTAAAATAGTCAAAAGTATGAGTGAAATTTTATCATAAATTATTTTCCTTTCCTTTCTCCTTTTATGACTGTTGGAAATATATAAATGCAGTCATCCTTTGATATCCACAAAGGAGTGGGTCCAATGTCCACTAGAATACTTAAACCCCATGGATGCTCAAATCCTTTTTTACAAAATGTTGCGTTTGAACTAACCTGCCGCCATACTCTACATTCTTTAAATCATCTTATTATCCACAGTGCAGAATACACTATATATGATGTGTAAATGGCTGCTATAGAATGTATTTCGAGAATAATGGGAGGAGTCTTCATGTTTAACACAAGTACAATTTTTTCTTTTAATCTGTAACTGCTTAAATTCACACATGTGAAGCCCACAGCCTGAATTTGAGCATTTGGGGCGCTGAGAGTTGAAGTGACGCAAGAAGAAGTTAATGAGGGTGTGTCATGGGGAAAGAAACAGCCACACTAGTGTCTCTGGGAAGGACAGGAATAGGAGACAGACCTACTGAGGGAGAAACCATCTCCCTCCTGCCCGCTAAGCCACAGATCCCAGAACACTCCAGAGAAACACTTTTCAGTCCCTAATCTTTCTAGGGAGCTGCCTGCTTATCATTCTCTGTACAGCCTGCCCCCAAGAACATGTCTGATATTGGACAGGAGGGCTAGGGACCCTGAAGGTTTGGAGGTGGTGTGGTTACCTGGGTCACAGGAAGGACACACTGCCTAACAGGAGGGTCCTGACCCCCTTTCTTCTGTGCTTGGTCTCCAAG
Seq C2 exon
TACACCCCCCTTAACCTCACAGCGCTGGACTGGTCCCTGCTGAGCAAGAAGGAGTGCCTGAGCTACGGCGGGCGCCTGCTCGGGAGCTCCTGCCAGTTCGTCCCAGACCTGGCGCTCATGTCCTTCATCCTTTTCTTTGGGACTTACTCCATGACCTTGACTCTGAAGAAATTCAAGTTCAGCCGCTATTTTCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323:ENSMUST00000113899:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(3.6=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types