MmuINT0147218 @ mm9
Intron Retention
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83247213-83249504:+
Coord C1 exon
chr6:83247213-83247377
Coord A exon
chr6:83247378-83249419
Coord C2 exon
chr6:83249420-83249504
Length
2042 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TTCCCGCTGTTTTTCTCCAGCCC
3' ss Score
9.35
Exon sequences
Seq C1 exon
ATCCTGGGCCTTATCATTGTTCGAAGGCTCCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGACAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCAATG
Seq A exon
GTGAGCAGTCCAGGGAGAGGGCAGAGACTGAGAGACTCGGTTCTGCCAGGATGAGGGGTGTCTCTGTGGGTGGTCTTGGGTGCTGAGACCCCATGTGTTTCTGGAAATGTCTTCAGGATGGTCAGAGCTAGTGAGCTGACTTGCCTAGAAGCAGACAATGGCTACTACTGTGGGTTCTCAGGACCATTTTCAAGTCCTTCTGTGGGTTCTCAGGACCATTTTCAAGTCACTGGGGCAGAAGAGGCTCTAACATAGAAGGTAGTTGTAAGGAGAATTGCCTGAGAAAGGAGCAGGTCTGGGGAGAGGGTCCAGTGGGAACTCACATCAGGCCTGGACTCCAGGGGTGTCACCCTGGTAACAGCTTAGCTTGGGCTTACCTACATAGGATCAGGGATAGAAGTGGGAGAAAGAAGACTTCACTGAAGGTACAGTGACCACGTGGTTGCCCCGCCTACTCGTCCCCTCTCCCATGCTTCTTTCATCCTGGCCCTAAAACACTCAGGAGTTGAGAGCCACATGTCAGTCCACGATGTACGGTAGGCACCAAAACTCCAGGCAGAAAGATTCAAACACTCACTACAAATGGTGGAAACTCTTCCCCAAATGGAACACAAACTCCCAATATGGCTATATAGCCAAGTCTAAGAGAACTAAGAACCGCATTCCTGCTTTGATGACCCCTTTCCTGGCGCCATGCCAAATTCCTAGTCTTTCCCCATTTACCTCAAATCCATAACCTTCACCTGCCCTTTGCCAATGAAAACTGTTCACAGGCAAATCTAACTGTAATGACTTCCCCTTCCTAAATGCTGCCCTCTTACAGGAGAGAGCCTATATGTACTTTAACAAAGGAGGGGGGAGCTCTGAGTCTGGGGATATGGCTCAGTTGGTATGGCCATAGCATGCATGAAGCTCTGGGTTCTGTTTCTAGCACCTTATAAGCCAGGCATGGCCATGCATACCTGTTAGCTGACGTTGAATGTTGGCTCAAGAGGTTGAGACAAGAGGACCAGAAATTTAAGGGCATCCCCAGGCACATAGTGAGTTTGAGGCCAGCCTGTAGAGGGAGGGAGGTGGGGAGGGATGAAGGGAGTAAGGGAGGGAGGTAGGGCTTGGGTCCAAGCATCTTATTTTATTTTAAGATTTATTTTATTATGATGTATGTACTGCTGGAGCAGTGTCTGGGTGTATGAACCCGGCTGTGAGCTTGTGAGAGCAGGTGCCTGTGGATGTCAGTAGGGAACGTCAGATCCCTGAGGCTGGAGTCACAGGTGATTGAGAGGCACCCAGTGTGGTGCTGGGAACCACACTCCAGCCATGGCAGCCAGGATGCTTAGCTGCTGAACCACCTCTCCAGCCCCGCCCTCCGCCAAGGGTCTTTTTTGTTGTTATTTCACGTACATTGCTGTTTTGCCTGCTTGTGTGTCTCTGTGAGGGGTGTTGGAACAGCTGGAAATTGAGTTACAGACAGTTGTGAGCTGCCAGGTTGGTCCTGGGAATGGAATCCAGAATTTCTGGAAGAGCGGCCAGTGTTCTTAACCACTGAGCCGCCTCCCCAGCCCCTCACCAAGTGCCTTTTAAAAACAAAGACGTTTTCTTTGGTTTCTTCAGTAAACTTCTGAGTAGCTCCCATGTACCAGGAGTTTCTCCAGGTCTGAGGGAAACCATCTCAGCATTTTATGATACATAGACTCAGTAGAAGAATGAAGCTTGCGTCCCATACACCCATCTTACAAGTCTCTTTATGGCGATGCTGCTATAGTCTGAGTCACTCACAGTGACCGCTTACACAGCAGACTGTACTCTTTGGAGAGACGTTGCTGGCTGAATTCCTTGCTATGTCCTGGGCCGTAGAACAGTGGGTAACTGTGCCGTGGTGGCTTGGTGGGCCCGAGTGTTTACTGAAGCTCTCAGTACTTGGTCTGGGTGGGAAGAGACTGGTGGCTCCCACACGGTGCCTGTATGCATCTTGCTTGCCTCTCAGTGAGGAAATCTGAGTGGTTGTCTTGGTGTTTATCTGCTTTCCCGCTGTTTTTCTCCAG
Seq C2 exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCCATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-Slc4a5:NM_001166067:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: