DreINT0151575 @ danRer10
Intron Retention
Gene
ENSDARG00000104387 | slc4a5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
Coordinates
chr10:45050051-45051378:+
Coord C1 exon
chr10:45050051-45050215
Coord A exon
chr10:45050216-45051365
Coord C2 exon
chr10:45051366-45051378
Length
1150 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CTTCTGCTTTAACTCCACAGTGT
3' ss Score
8.38
Exon sequences
Seq C1 exon
ATCCTGGGCCTGATGGTGGTGAGGAAAGCTCTGGATCTGATCTTCTCTCAGCATGACCTGGCCTGGCTGGACGACATTCTGCCCGATAAAGACAAGAAGAAGAAAGAGGACGAGAAGAAGAAGAAGAAAAGCAAGACGGATGAGCACAACAACAGCGATGAGGAG
Seq A exon
GTACAGACTGCACATCTGTAGATCAGGGGGCGTATTACAGAAAGATAATACACTCTAAACATCTTACTTACTGACGTTATTTCCCCATGATCGACGATTCAGGTTTTATTTGTTATCTAAATGTTACCTTCAATTATTTTATTATTATAAAGAATATAAACACGCTCTTTCAATAGAAAAATACCTTTGATCGTTGAGTATATTTACAGTACAAATGATAACACTGAAATGTGAGAGGAAAAAAGTACATAAATAATTACACTAAAACTAAAATAACAAAACCAAGGTACATAATTAATCAATAATATGTAAAGTTGTTCTTGTTTACATTACTAAATACACTGAGTTAAACTTACAGTAGACTCACCACAACAGATCAATTACTGTAGTTATTGTGTTACCATAGCAACTATAGAATCACCATCATACGTCAACTACTATAGTTGATCTGTTACCATAGCAACTGCAGAATCACCTTAACACATCAATTACTGTAGTTGTTGTGTTACCATAGCAACTGTAGAGTCACCACAGCAGGTCAATTACTATAATCATTGTGTTACCATAGCAACTGTAGAATCACCGCAACAGATTAATTATTATAGTTGTTACCATAGCAACTGTAGAATCACCACGACACATCAATTACTGTAGTTACCATAGCAGCTGTAGAATCACCATGACACTTCAATTACTATAGTTGTTTTGTTGCCATAGCAACTGTAGAATCACCACGACACATCAGTTACTGTAGTTATTGTGTTGCCATAGCAACTATAGATCATCACGACAGATCCATTAGTAATACATTTTGTACTGTATTAATTCATCTAGTTAAAGTTGGTTAACGTAATTTAAATAAATGTTTTACCAATTTTTAAGTTGGTAAATACAGTAACTAATGGAACGTTATTTTAAAGTGTTATAAAGACATCCTACATATAGATAAGATACAGATCTTTCGAATCCTAAATAATATTAAGATTTACTTCTGAACAAATATAAAAATTTGCTTAGAATAATAACAGTCCGATTTAACGATACATCAGTTAAGAATAAAGATTAGAAAGTTTCTTTAATACGCCCCTGATTATATCTGAGCTTCTGCGCTCTCGTTTCACCTGTCATCTCTTCTGCTTTAACTCCACAG
Seq C2 exon
TGTTGCTGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104387:ENSDART00000162669:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]