RnoINT0138532 @ rn6
Intron Retention
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114997946-114999089:+
Coord C1 exon
chr4:114997946-114998030
Coord A exon
chr4:114998031-114999021
Coord C2 exon
chr4:114999022-114999089
Length
991 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ACATCCTCATCTCCCTCCAGGAA
3' ss Score
10.88
Exon sequences
Seq C1 exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCAATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGGCA
Seq A exon
GTAAGTAAAGCACCTGCTTCCTCCCTTCCCACGCACGCTGATCTTCCAGCCCCCCCTCAGGACTTCCCCTTGGAGCTCGGTGTTCTGCTTGTTTTAGATGCTGAGGACTCCTGTGCCAGGGAGAAATAAAAATGTCCGCCAAGAGCATAGAATGCCACCATATGAAGACATCCCCTCCCCATAAAGGAGCATCCTCCAGTCTTCATTTTAGACAAGACCGCCATTCCTATTTTAGTATATGTGCTGCCGAAGCGAGCACAAGACCGCCATTCCTAACTTTCCTTTGGCCCCCGTGGCTTTGCTGGTCTTCCCTTTCATTGTTTTAGAACACATCTGTCCAAATGTGGCCCCCGAGTCTCCCACATTTTCCTGGAACTGTGACGATTGAGATTGAGAATCCCAGTCACCATTCCATACTAGACGGCCGTGGATGGGTCCGGCCTTGGTATTAGGCTGTGATCGTGTGAAAAGCCACAGGCGCCTGCCACTGCTGGCTGAGAGGGTGATTGGGAAAGTCAGCTTACGCTCATGAAGACCCTTCTAGATCCTTCCCCAGTGGTAGGCAGTCCAACCTGTCCTGTCTTCTGCAGGAGGCAGTGGAGCCCTGATCATAGAGAAGGGAGGATCCTATCAGAACTTGTTACTCTTCTCAAGGACAGGTCAGACTCGGGTGGCCAGCACATCCTGCCAGCACCCTCAGGGGCCCTTGAGGACTCTGCAACATAGCACAAGGTCACTTGAGGTCTCTTCTCTCCCACTGTCTGCTGTCCCCTCCATACCTGGCTTTCCCCGTGCCTCTTTCCTTCCTAGCCCTGTAAGGGCCTGTATGAGGGATTGAGCCTGAAGCCGCCCAAGCTCTCCGAGGCCCTAGTATTCCCCTTGTGCCGTGCTGACTAGAGCTGAAGAGCAGAGCACAGGGAGGGTGAGGGCGTCTGGAGAACTAGGGACCCTGCTGGACCTGCTCACGGCTGACATCCTCATCTCCCTCCAG
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGCCACTCTCTCTGACTCCTCCTTCAGTGCCTCAGAACCAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378:ENSRNOT00000014249:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]