RnoEX0082855 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114995260-114999089:+
Coord C1 exon
chr4:114995260-114995412
Coord A exon
chr4:114997946-114998030
Coord C2 exon
chr4:114999022-114999089
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCCCACTGTTTTTCTCCAGCCC
3' ss Score
9.4
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
ATCCTGGGCCTAATCATTGTTCGAAGGCTCCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGAGAAAAAGGAATCAGACAGGAAGAAGAGGAGGAAAGAGGTCCACGAGAACACGGACAAGGAG
Seq A exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCAATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGGCA
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGCCACTCTCTCTGACTCCTCCTTCAGTGCCTCAGAACCAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.112 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGAAGGCTCCTGGACTTG
R:
GAGAGAGTGGCTCCAACTGGA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]