HsaEX0059821 @ hg38
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74221467-74224995:-
Coord C1 exon
chr2:74224840-74224995
Coord A exon
chr2:74222868-74222952
Coord C2 exon
chr2:74221467-74221501
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCCCACTGTTTTTCTCCAGCCC
3' ss Score
9.4
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATCCTGGGCCTCATCATCGTTCGAAGGCTTCTGGATTTCATCTTTTCCCAGCACGACCTGGCCTGGATTGACAACATCCTCCCAGAGAAGGAAAAAAAGGAGACAGACAAGAAGAGGAAGAGAAAAAAAGGGGCCCACGAGGACTGTGATGAGGAG
Seq A exon
CCCCAGTTCCCTCCTCCCTCGGTTATAAAGATTCCCATGGAAAGTGTCCAATCAGATCCCCAAAACGGTATCCACTGCATTGCCA
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGTTACTCACTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687_MULTIEX4-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.087 C2=0.025
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(1.9=17.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTCATCATCGTTCGAAGG
R:
AGTGAGTAACTCCAACTGGAAGA
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development