BtaEX6043055 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10399399-10403977:+
Coord C1 exon
chr11:10399399-10399551
Coord A exon
chr11:10402874-10402883
Coord C2 exon
chr11:10403943-10403977
Length
10 bp
Sequences
Splice sites
3' ss Seq
TACAGCTCTTCTGTGTGTTCTGC
3' ss Score
-10.95
5' ss Seq
ACAGTAAAT
5' ss Score
1.91
Exon sequences
Seq C1 exon
ATCCTGGGTCTCATCATTGTTCGAAGGCTTCTGGACCTCATCTTTTCCCAGCATGACCTGGCCTGGATTGACAACATCCTCCCAGAGAAGGAGAAAAAGGAGGCAGATAAGAAGAAGAGAAGGAAAGGGGCCCATGAAGACAGTGACGAGGAG
Seq A exon
TGCATTAACA
Seq C2 exon
GACAAAGATCTTCCAGTTGGAGTTACTCACTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'33-30,'33-28,36-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.373 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATCCTCCCAGAGAAGGA
R:
ACTCCAACTGGAAGATCTTTGTC
Band lengths:
106-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]