MmuEX0043417 @ mm9
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83247213-83250532:+
Coord C1 exon
chr6:83247213-83247377
Coord A exon
chr6:83249420-83249504
Coord C2 exon
chr6:83250465-83250532
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCCCGCTGTTTTTCTCCAGCCC
3' ss Score
9.35
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATCCTGGGCCTTATCATTGTTCGAAGGCTCCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGACAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCAATG
Seq A exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCCATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGCCA
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGTTACTCTCTCTGACTCCTCCATCAGTGGCTCAGAACTGGATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.080 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACCTGGCCTGGATTGAC
R:
TCGATCCAGTTCTGAGCCACT
Band lengths:
180-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: