HsaEX0059821 @ hg19
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168]
Coordinates
chr2:74448561-74452138:-
Coord C1 exon
chr2:74451967-74452138
Coord A exon
chr2:74449995-74450079
Coord C2 exon
chr2:74448561-74448628
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCCCACTGTTTTTCTCCAGCCC
3' ss Score
9.4
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
TCTCTCTCCACCACAGATCCTGGGCCTCATCATCGTTCGAAGGCTTCTGGATTTCATCTTTTCCCAGCACGACCTGGCCTGGATTGACAACATCCTCCCAGAGAAGGAAAAAAAGGAGACAGACAAGAAGAGGAAGAGAAAAAAAGGGGCCCACGAGGACTGTGATGAGGAG
Seq A exon
CCCCAGTTCCCTCCTCCCTCGGTTATAAAGATTCCCATGGAAAGTGTCCAATCAGATCCCCAAAACGGTATCCACTGCATTGCCA
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGTTACTCACTCTGATTCTTCCTTCAGTGACACAGAACTTGACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687-'36-41,'36-40,37-41
Average complexity
S
Mappability confidence:
86%=75=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.374 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(1.9=17.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGCCTGGATTGACAAC
R:
CGGTCAAGTTCTGTGTCACTGA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)