HsaINT0153459 @ hg19
Intron Retention
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168]
Coordinates
chr2:74448561-74450079:-
Coord C1 exon
chr2:74449995-74450079
Coord A exon
chr2:74448629-74449994
Coord C2 exon
chr2:74448561-74448628
Length
1366 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ATTTTTCATTTTCCTGCCAGGAA
3' ss Score
9.08
Exon sequences
Seq C1 exon
CCCCAGTTCCCTCCTCCCTCGGTTATAAAGATTCCCATGGAAAGTGTCCAATCAGATCCCCAAAACGGTATCCACTGCATTGCCA
Seq A exon
GTAAGTAAAACACATGATGTCTCTCCCTTCTTACTACTAGTCCTCCATGTCTTTCCCCTAGGAACTTTCATCTGTAACTCAGGGGGATCTAATCATTTTGGATGCTAGAGCAGCAGTCCCCAACTTTTTTGTCATAAGGGACAAGTTTTGTGCAAGATAGTTTTTCCACGGACCAGTAGGGAGTGGGGAATGGTTTTGGGATGAGACTGTTCCACCTCAGATTCTCTTAAGGAATACGCAACCTAGATCCTGCATATGGACAGTTCACAATAGGGTTCTCACCCTTATGAGAATCTATTGCTGCCACTGATCCCACCGGAGCTGGAGCACAGGGGTTAATGCTTGCTCGCCCATGCTCACCTCCTGCTGTGCGGCCTGGTTCTGCTACTGTTCCATGGCCTGGGAGCTGAGGACCCCTGCGCTAGAAGACCTTTGTCCTTGGCAGAGATCAAAGAGAACTGGGCCACCAGGACTGGTACTCCAACCAGATGGAAACCCCAGAGCAAAGCCTGCAGACTCGACTAATTCTCACTTTAGTTGAGGCAAAATCCCTCATTCCCTCCTTTCCCCAGGTGTCCCCAGATCCCTGTGGCATCTCCTGGCCCTCTTCTATGTTGTTTCAGACCACATCAGTCCAAACATGGCCCACCAGGCCTCCCATGTTTTCCAGTGGCTGTTGAAATGGTTGAGGGCTCAGAACCAAGCTTTTCCCTTTAGAGAAATAGGTAGCATAGCACTTGGGTTATAAGTCAGGCATAATTGGAGGTCCTCGTGGTGGTTGTGCTGTGCCTCTGTGTGAATCCTCAGCACCTTCTCAGCAGACAGCTGAGAGGGAGGCTGCCTAGGAGGGACTGGGCATTGCTTATGGAAATCCTGGGAGATTATATTACTGCCTTTAACCCCTCCCAGCCTCAGCTCCCTATAGGTGGCCAGTCCTGTCATCCAGGCAACATAGCCTGTCCCGAGGTCTTCTGAAAGATCCCTACCTTAGTCCCGAGCCCCGTGCTTCTAATACAGGGCTTGCCACCCTCAAAGACAGATTAGGGGTGGGTAGCCAGGGCATCCTTCCCATCAGCACTGTCCATCATAGGTACCTCAAGATCTTGAGTTTCTCAGACTCCTCCCCCACTCCTATTTCTCTCTTCCCTGGCCCTCCCATGCCTCACACCCCCTAGCCCTGGCTGAGCACCTTCTGGGTGAAGGAGTAACTAAGCCCGAAGCCACACATCTCTGAGGCCCCGTATTCCTCTTGCATAGTGTTGGCTCTAGGGTTAGAGAAGGAAAAGAAAGGAAATGGTGGGGGAAGCCCGGAGAAATATGGTGCTCAAACCTGCTCCACATCTGACATTTTTCATTTTCCTGCCAG
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGTTACTCACTCTGATTCTTCCTTCAGTGACACAGAACTTGACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687-SLC4A5:NM_021196:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)