MmuINT0147219 @ mm9
Intron Retention
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83249420-83250532:+
Coord C1 exon
chr6:83249420-83249504
Coord A exon
chr6:83249505-83250464
Coord C2 exon
chr6:83250465-83250532
Length
960 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GGCTCCTCATTTCCCTCCAGGAA
3' ss Score
9.41
Exon sequences
Seq C1 exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCCATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGCCA
Seq A exon
GTAAGTAAAGCCCCTGCTCTCTCCCTTCCTACTCACTGCCAATCTTCCAGCACCCGGTGAGGGACGTCCCCTTGTAGCTCAGTGCTCTACTTGTTTTAGATGATGAGGATGCTGTGCCCGGGAGAAATAAAAAGAACTGGCCAAGAGCATGGGAACGCCACCATGTGCAGACACCCCTTTCCCGTAAGAGTATCTTCCAGACTTCGCTTTAGACAGGACCGCCATTCCTGACTTTCCTCTGGCCCCATGGCTTTGCTGGTCTTCCCCTTCATTGTTTTAGAACACATCTGTCCGACTATGGCCCCCAGTCTCCCACATCTTCCTGGAACTGTGACGATTGAGAGTCCCAGTCATCATTCCATATTAGAGAGACAGCCATGAATGAGTGCAGCCCTGGCATGGCGCTGTGATCCTGTGAAAGCCACAGGCAGGCACCTGCCACTGCTGACCGGGAGCTTGCTTGGGAAAGTCAGCTTTGCTCATGAAGACCCTTCTAGCTCCTTCACAGTGTCTAGTTCTTCCCCAGTGATAGACAGTCCAACCTGCCCTTGTAGTCTTCTGCAGGTTGTAATGGAGCCCTGATCACAGATAATGGAGGATCCTATCAGAACTTGTCACTCTTCTCAAAGACAGGTCAGATGCAGGGGGCCAGCATGGGCCCTTGAGGGCTCTCCATCACAGCACAAAGTCACTTGAGGTTTCTTCTTCTCCTGTCCCACATTCTGTCCTCCTCTCAGTCCTGCCCTCCCCATGCCCTTCCTAACCAGCTAAGAGCCCCTGTGTGAGGTGTTGAGACTGAAGCCACCCATCCTCTGTGAGGCCCCAGTATTCCTTCCCCTTGTGCAGTGTTGGCTAGGGCTGAAGAGCAGAACACAGAGTGGGTGAGGGGGTTCTGGATAACAAGACCGTCCCCGGTACCCTGCTGGGCTTGCTCACAGCTGGCTCCTCATTTCCCTCCAG
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGTTACTCTCTCTGACTCCTCCATCAGTGGCTCAGAACTGGATCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-Slc4a5:NM_001166067:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: