BtaINT0136131 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10402874-10403977:+
Coord C1 exon
chr11:10402874-10402883
Coord A exon
chr11:10402884-10403942
Coord C2 exon
chr11:10403943-10403977
Length
1059 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAAT
5' ss Score
1.91
3' ss Seq
CACTTTAATTTTCCTGCCAGGAC
3' ss Score
8.37
Exon sequences
Seq C1 exon
TGCATTAACA
Seq A exon
GTAAATAAAACACATTGTGTCTCTCCCTTCCTACTTACTACTAATCCTCTACCTCTTCCTCAAGGAATTTTCACTTTTAACTCAGATCTGTTGGTCTTAGGACTCCTGTGCTAGGCAGAATTCAAAAAGAACTGGGCTATAAGAATTGGGACTCCAACCATATGGAAGCCCCAAATCAGAGTGTATAGATTTCAGTGGTCTTCACTTTAGTGTGGGCAAACCCCCTCTTTCCTTCCTTACCCCTTGTGCCCCCAGTTGCCCATGGCACCACCTGCCCCCTCTTGCACTGTTTCAGATGCACTAATCCAAACATGGCCTGTTGAGCCTCGCATGTTGCCTATGATTGTTGAAATGACTGAGAGCTCAAATCCCAGCTGAGCTGCTCCTCTAGGAGAGCAAGTAGCATCACACTAGGATTATGAATTAGTCAAGGTCCTAGGGCTTGCTCCCCGAGGTTCTGAATGAGTGACAAACACCTTCCACATGTTGGAAGGGAACCTGCCCCAAAAGGACCAGATGTGGTTTATGAAGACCCTGGGGGATTTTTTTTGCTGTCTTTACCCACTCCCAGCCTCAGCTTCCTATCGGTGGACAGTCCTGTCATCAAGACAACACAGTCTATCCTGGGCGTAGTCTGAAAGATCCCAACATGAGTCCTGACCCTGGTGCCCCTAAGGGCTTGGCACTTTCCCATTTTAGGCATCCTGCCAGCCCCCACAAGGGCCTTCCAGCAAAGGGGCTTCCCCTTATATTCTCCCACAGAGGTACTTCTTCCTTGTGAATTTCCCACTCTCCTTCTCCTTTCCTCTTGTATACATCCATCTCCCTTCCTCATTTTCCCCTGGCCCCTGCCATGCCTCCCACCTACCTCTGGGTGAAGGAATAACTGAAGCGGAAGCCACCCACCTCTGGGGTCCCTGTATCATCTGGTGTAGCACTGGCCACGGGGTTAGAGAACAGAAAGGAGAGGAAATGGGTGAGGGAAGCACTGGAGAAAGAGTATTCTCCAGAATAGTTCTCAAACCTGCTCCACATCTGACACTTTAATTTTCCTGCCAG
Seq C2 exon
GACAAAGATCTTCCAGTTGGAGTTACTCACTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884:ENSBTAT00000006425:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development