RnoEX0082856 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114997946-114999089:+
Coord C1 exon
chr4:114997946-114998030
Coord A exon
chr4:114998621-114998762
Coord C2 exon
chr4:114999022-114999089
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACCTGTCCTGTCTTCTGCAGGAG
3' ss Score
12.49
5' ss Seq
AAGGTCACT
5' ss Score
3.39
Exon sequences
Seq C1 exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCAATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGGCA
Seq A exon
GAGGCAGTGGAGCCCTGATCATAGAGAAGGGAGGATCCTATCAGAACTTGTTACTCTTCTCAAGGACAGGTCAGACTCGGGTGGCCAGCACATCCTGCCAGCACCCTCAGGGGCCCTTGAGGACTCTGCAACATAGCACAAG
Seq C2 exon
GAAAAAGATCTTCCAGTTGGAGCCACTCTCTCTGACTCCTCCTTCAGTGCCTCAGAACCAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378_MULTIEX2-2/2=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=0.396 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000014249fB13735
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGTTCCTTCCTCCCTC
R:
CTGGTTCTGAGGCACTGAAGG
Band lengths:
146-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]