MmuINT0152683 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:90252120-90252695:-
Coord C1 exon
chr16:90252502-90252695
Coord A exon
chr16:90252229-90252501
Coord C2 exon
chr16:90252120-90252228
Length
273 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
3' ss Seq
AAGTGCTCACCTCATTTTAGTGG
3' ss Score
3.92
Exon sequences
Seq C1 exon
AAGCTGCTTGATAGATTCGATTACGATGACGAGCCAGAAGCTGTGGAAGACTCAAAGAAAGAGGATGCTGCAGCCATCAGCACCGCAGCCCTTGCCACGGCTGCGCCTCCTGCACCCACTGCAGCCACACCTGCTGTTGCCACGGCTGTGCCTGTGCCCTCTGCTACCTCTCCCCCTCCTCCACAGACCCCATT
Seq A exon
GTGAGTTCTTCCTAATGCCTTGAAAGTTGTATAATCTAAGCACCAGTTAGGATAAAAACACATTCCAGTACAGTCTTTGTTTTAAAAAATTATATTAAAGAAATTCCTATTGGGAATAGTGTCCTTATCAGAGTTAGAATTTTAAAATGTGGCATTTGTGTTGTACTAAATTTGTTGATTGCTTGTTACTCCAGAGTGACATTCTGTAATGTAAATGTGACTTAGGGCATTGAGTGCTTTGAGTGAGTAATGAAAGTGCTCACCTCATTTTAG
Seq C2 exon
TGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
-Srsf15:NM_178923:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTTGATAGATTCGATTACG
R:
ATGGTGCATCGTATCCTGCTG
Band lengths:
299-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: