MmuINT0153106 @ mm9
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:30904658-30905246:-
Coord C1 exon
chr9:30905142-30905246
Coord A exon
chr9:30904769-30905141
Coord C2 exon
chr9:30904658-30904768
Length
373 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TTCTAGCTCTCCCACAACAGGAT
3' ss Score
5.77
Exon sequences
Seq C1 exon
CGTGCCCAGGGATGTTCATGTGCAAGACTGGACGGTGCATCCGAAAGGAACTGCGCTGCGACGGCTGGGCAGACTGCCCGGATTATAGTGATGAGCGTTACTGCC
Seq A exon
GTGAGTCTTGCTGTAGCCTGCCCCAGACTCCCCATTTCTGTCCCCTCCTGCCTACTCCTACTCTCTCCTACCCTTTTCTTGTCCAGTGGGGCACGACCTTCTCCTTCCCTGGTTCTGCGCTGTCTATTCTGGCAAAAAGAAACAAGGCAATGAGACCCTGGTTTCACCCTTATACCCCCTCCTGCCCACCGCCCTCCCCTCATCCCCAGCCCACGCCATTGGGAATCTTGGCTAGCAGACGAGTGTCTGTCAGCGCTGACAGCTACTGGTGCAGAGTAGCTCACTGTTTTCCAGATAAGACAGCATCCTGGCAACTGTGACTGCCCAGGCTGCCCCTGGGAGCCTGCAGCTGATTCTAGCTCTCCCACAACAG
Seq C2 exon
GATGCAATGCCACCCACCAGTTCACGTGCAAAAACCAGTTCTGCAAGCCCCTCTTCTGGGTCTGTGACAGTGTCAACGACTGTGGGGACGGAAGTGACGAGGAGGGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-St14:NM_011176:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.4=94.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCAGGGATGTTCATGTG
R:
GCAGCCCTCCTCGTCACTTC
Band lengths:
214-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: