RnoINT0144082 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32244691-32245250:-
Coord C1 exon
chr8:32245146-32245250
Coord A exon
chr8:32244802-32245145
Coord C2 exon
chr8:32244691-32244801
Length
344 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
CTCTGGCTCTCCCATTATAGGAT
3' ss Score
10.59
Exon sequences
Seq C1 exon
CATGCCCAGGGATGTTCATGTGTAAGACTGGACGGTGCATCCGCAAGGACTTGCGCTGCGATGGCTGGGCTGACTGCCCGGACTACAGTGATGAGCGTCACTGCC
Seq A exon
GTGAGTCCCACTGTAGTCTGCCCCAGCCCCCTCTTTCTCGCACCGTGCCCTGTCCCCTCCTTCCTCCTCCTACTCTCTCCTACCCTTTTCTTGTCCAATGGCACGACCTTCTCCTTCCCTGGTTTTGCACTGTCCATCCTGGCAAAAAGACACAAGGCTTTTTGTCCCCCTGCCTCCCTGCCGTACCCCCCACCCCCATGCCATTGGAAATCTTGGTTAGCAGTCAAGTGTCTGTCAGCACTGACAGCTAGTGGTGCAGAGCAGCTCAGACAGCATCTCTGGCAATTGTGACTGCCCAGGCTGCCCCTGGGAGCCTCCAGCTGACTCTGGCTCTCCCATTATAG
Seq C2 exon
GATGCAACGCTACCCACCAGTTCATGTGCAAGAACCAGTTCTGCAAGCCCCTCTTCTGGGTCTGTGACAGTGTCAACGACTGTGGGGATGGCAGCGATGAGGAGGGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.4=94.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCCAGGGATGTTCATGTG
R:
GCAGCCCTCCTCATCGCT
Band lengths:
214-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]