MmuINT0153347 @ mm9
Intron Retention
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31963334-31963688:-
Coord C1 exon
chr14:31963590-31963688
Coord A exon
chr14:31963466-31963589
Coord C2 exon
chr14:31963334-31963465
Length
124 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
AACTGACCCCTTTTTGGCAGGGT
3' ss Score
4.39
Exon sequences
Seq C1 exon
CACCACAAACTGGTGGCCCAAATCGAGGCTGCCAAAGCCTACACCATCTTTGTGCCCACAAATCACTCTCTGGAGACCCAGGGCAACAACAGTGTCCTG
Seq A exon
GTGAGGCCTTGGGAGTGGGGAAGATGAGCCTGTTATGCCATAGCAAAGGAACATGGTAGGGGATGGCATGAAACCCAGGGCACTCAAGAGTCTCAGAAACCCTGAACTGACCCCTTTTTGGCAG
Seq C2 exon
GGTATAGACACGGTGCGACATCACGTGATCCTTGGGGAGGCACTCTCTGTGGAGGTCCTGCGGAAAGGGGGACACCGCAACTCCCTCCTGGGCCCTGCCCACTGGCTGGTCTTCTACAATCACAGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-Stab1:NM_138672:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAACTGGTGGCCCAAATC
R:
GGCCACTGTGATTGTAGAAGACC
Band lengths:
226-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: