RnoINT0144295 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7232463-7232816:-
Coord C1 exon
chr16:7232718-7232816
Coord A exon
chr16:7232595-7232717
Coord C2 exon
chr16:7232463-7232594
Length
123 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
AACTGACTCATTCCTGCCAGGGC
3' ss Score
6.07
Exon sequences
Seq C1 exon
CACCACAAACTGGTAGCCCAAATAGAGGCTGCCAAAGCCTACACCATCTTCGTGCCCACAAATCACTCTCTGGAGACCCAGGGCAACAAGAGTATCCTG
Seq A exon
GTGAGGCCTTGGGGACGGGGAAGATGAGCCTCCTATGCCATGGCCACGGAACATGGTGGGGGTGGCACGATACCCAGGTCGCTCAAGAGTCTTAGAAACCCTGAACTGACTCATTCCTGCCAG
Seq C2 exon
GGCATAGACATAGTGCGACATCACGTGATCCTCGGGGAGGCACTGTCCGTGGAGGTCCTGCGGAAAGGGGGACACCGCAACTCCCTCCTGGGCCCTGCCCACTGGCTGGTTTTCTACAATCATAGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(27.8=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(37.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAAACTGGTAGCCCAAAT
R:
TGGCCACTATGATTGTAGAAAACCA
Band lengths:
228-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]