MmuINT0153351 @ mm9
Intron Retention
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31961409-31962209:-
Coord C1 exon
chr14:31962126-31962209
Coord A exon
chr14:31961605-31962125
Coord C2 exon
chr14:31961409-31961604
Length
521 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
CCATTCCCCTGCCCCTATAGGTG
3' ss Score
10.67
Exon sequences
Seq C1 exon
GACACACCGAGGAAGAGCTGTGTCTACAGATCTGGATTGTCTTTCTCCCGGGGCTGTTCCTACACCTGTGCCAAGAAGATCCAG
Seq A exon
GTTTGCTCTGAGGTGCCCCCAACCAAGGCTTCACCCAGGGAGGAGAGGACAGAGGAGCCCCACCCCCAACCCCGAGGAAGAATTTAGATTGATTTCAAGAGCAGAGATGCTGAGCCTTCAATGAAGACAGCAAAACAAATGCCTTAGGAATGTCCAAAATCAGAGAGCTACCATTGGCCCTGTGTCTAACCCCTGGGGGATGGGGATGGGAGAGAGATACAGGGTCACATCCCAGAGCTGGCACCATTAGCCAAACCCAGTGGCAGTAACCAAGCTTCCTGCTCCTGTGCAGTCTATTCAGTCACAGTCTTCTCTGTTTGAGCCTAACCCCCACAGAGAAGGATTGTGGAAGACATCCTCCACATCCTGCCTGTCCTGGTCTACCCTCCCTGGGTCTGTGCTTCCAAGTTGTCCTGTCTTGTGTCTGCATGGCCCTGAGATGTTATCATCTCTCCCTGGCTAGTGACATCAATCCCGGCCTGAGCCTCTCTCCTTCCCTTCCCATTCCCCTGCCCCTATAG
Seq C2 exon
GTGCCCGACTGCTGCCCAGGCTTCTTTGGTACCCTGTGTGAGCCCTGCCCAGGGGGTCTTGGTGGAGTGTGCTCAGGCCATGGGCAGTGCCAAGACAGATTCCTGGGCAATGGGGAATGTCGCTGCCAAGAGGGGTTCCATGGGACAGCCTGTGAGATGTGTGAGCTGGGTCGCTATGGCCCCACCTGCTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-Stab1:NM_138672:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACACCGAGGAAGAGCTGT
R:
CTCCAGAGCAGGTGGGGC
Band lengths:
280-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: